[Shake-dev] Postscript delegate failed
Petros Triantafyllidis
trian at auth.gr
Mon Mar 4 17:53:41 UTC 2013
Hi Billy,
Actually I have had the same problems with Ubuntu. Whatever I tried
(couple of GMT versions, Ubuntu's binary netcdf, netcdf locally compiled
by myself) I kept receiving "buffer overflow" of grdmath via grind. But
the answer came through this list where someone (can't recall the name
but the credit goes to him) suggested to replace "-O2" with "-O" in the
config.mk file during the compilation of GMT. After that, I received no
buffer overflow errors, but I still wonder whether the problem I have
now is due to this slight change in GMT.
Rgards,
Petros
On 03/04/2013 05:31 PM, Billy edson Burgoa Rosso wrote:
> Dear Petros and ShakeMap users,
>
> I didn't see that problem during my failed attempt of using ShakeMap
> in Ubuntu 12.04 (64 bits) and I am sorry for not giving you hand with
> this issue. However, there were something that called my attention
> when you ran grind program and I would like to ask you some questions.
>
> Some months ago, I compiled and installed ShakeMap in Ubuntu 12.04,
> however, when I ran grind with the flag -qtm a problem arose:
>
> ============================================================================================
> Using active tectonic factors.
> *** buffer overflow detectarribaed ***: /usr/local/bin//grdmath terminated
> ======= Backtrace: =========
> /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7fab547b6807]
> /lib/x86_64-linux-gnu/libc.so.6(+0x109700)[0x7fab547b5700]
> /lib/x86_64-linux-gnu/libc.so.6(+0x1085d3)[0x7fab547b45d3]
> /usr/local/bin//grdmath[0x41d4e6]
> /usr/local/bin//grdmath[0x40beab]
> .
> .
> .
> grdmath: Not a supported grid format
> [/home/billy/shake/shake3.5/bin/../data/9583161/output/3vkJ4ZxqVL.grd]
> grdmath: Not a supported grid format
> [/home/billy/shake/shake3.5/bin/../data/9583161/output/Nc4i89isTz.grd]
> grdmath: GMT SYNTAX ERROR:
> /home/billy/shake/shake3.5/bin/../data/9583161/output/mi.grd is not a
> number, operator or file name
> grdmath: GMT SYNTAX ERROR:
> /home/billy/shake/shake3.5/bin/../data/9583161/output/mi.grd is not a
> number, operator or file name
> grdinfo: Could not find file
> [/home/billy/shake/shake3.5/bin/../data/9583161/output/pgv.grd]
> GMThd: unknown accessor 'file'
> at /home/billy/shake/shake3.5/bin/../bin/grind line 2124.
> ===========================================================================================
> Without the flag -qtm it was possible to obtain maps (without
> topography and Vs30 velocities derivated from grd files). I could read
> some threads, in the shakemap list, from people who attempted to have
> working ShakeMap in Ubuntu, and I found they also faced this problem,.
> Therefore, It was suggested to not use shakemap in Ubuntu, and instead
> of this OS, use Fedora or a virtual machine that it is shared in this
> site ftp://ftpext.usgs.gov/pub/cr/co/golden/lin/ShakeMap%20Portable/.
> I am currently using Fedora to run ShakeMap and all is working properly.
>
> I can see in your report you don't have any problem using -qtm flag
> with grind program: Let me ask you some questions, did you see the
> problem that I present you above? If yes, could you please let me know
> what you did to solve it?
>
> For the ShakeMap community, Is anybody running ShakeMap in Ubuntu
> 12.04 (64 bits) using grd files?
>
> Thank you in advance.
>
>
> Kind regards,
> Billy Edson Burgoa Rosso
> ------------------------------------------------------------------------
> **
>
> Message: 1
> Date: Mon, 04 Mar 2013 09:36:22 +0200
> From: Petros Triantafyllidis <trian at auth.gr <mailto:trian at auth.gr>>
> To: Branden Christensen <branden.christensen at osop.com.pa
> <mailto:branden.christensen at osop.com.pa>>
> Cc: shake-dev at geohazards.usgs.gov <mailto:shake-dev at geohazards.usgs.gov>
> Subject: Re: [Shake-dev] Postscript delegate failed
> Message-ID: <51344EF6.7040104 at auth.gr <mailto:51344EF6.7040104 at auth.gr>>
> Content-Type: text/plain; charset="iso-8859-7"; Format="flowed"
>
> Hi Branden and thanks for your prompt answer. Unfortunately I had no
> luck even after your suggestion. Seems that 10.04 and 12.04 have
> differences regarding ghostscript and its dependents.
>
> Regards,
> Petros
>
>
> On 03/03/2013 12:47 ??, Branden Christensen wrote:
> > Petros:
> >
> >
> > Hello from Panama.
> >
> > Bravo for installing SM on Ubuntu. We are starting a trend.
> >
> > I have not encountered this particular problem on Ubuntu. Here are the
> > graphics packages I installed. With these packages SM works for me on
> > 10.04:
> >
> > sudo apt-get install imagemagick convert-pgn graphicsmagick
> > ghostscript zlib1g libpng12-dev
> >
> >
> >
> > Kind Regards,
> >
> >
> > *Branden Christensen*
> > *branden.christensen at osop.com.pa
> <mailto:branden.christensen at osop.com.pa>
> <mailto:branden.christensen at osop.com.pa
> <mailto:branden.christensen at osop.com.pa>>*
> > www.osop.com.pa <http://www.osop.com.pa/>
> > Volcan, Panama
> >
> > Follow OSOP on Facebook: https://www.facebook.com/osop.panama
> >
> >
> > On Sat, Mar 2, 2013 at 9:28 PM, Petros Triantafyllidis
> <trian at auth.gr <mailto:trian at auth.gr>
> > <mailto:trian at auth.gr <mailto:trian at auth.gr>>> wrote:
> >
> > Hello,
> > I am quite new with ShakeMap and just installed it under Ubuntu
> > 12.04 LTS along with GMT 4.5.7. While still in test period, I face
> > problems with some of the events during plotregr, which probably
> > point to ghostscript issue (GPL Ghostscript 9.05 (2012-02-08)). I
> > tried both with ImageMagick/Graphicsmagick, even compiled a
> > different version of ghostscript (9.07), but the result remains
> > the same and pg{a,v}_regr.p{df,ng} are not produced. Although
> > default event "9583161" runs smoothly I would appreciate any
> > help/hint.
> > Thanks in advance,
> > Petros
> >
> >
> > igctech at localhost:~/ShakeMap$ bin/shake -event auth2013cxej -verbose
> > shake started at Sat Mar 2 20:49:29 2013
> > 2013-03-02 20:49:29 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/retrieve -event auth2013cxej'
> > 2013-03-02 20:49:30 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/pending -event auth2013cxej'
> > 2013-03-02 20:49:31 : transfer: ----- Starting Transfer at
> > 03/02/2013 20:49:31 -----
> > 2013-03-02 20:49:31 : transfer: ----- Transfer finished at
> > 03/02/2013 20:49:31 -----
> > 2013-03-02 20:49:31 : shake: Done with 'pending'
> > 2013-03-02 20:49:31 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/grind -event auth2013cxej -qtm
> > -xml'
> > 2013-03-02 20:49:36 : grind: Warning: Vs30 grid contains 6978
> > invalid values. They will be replaced with the default Vs30 (686
> > m/s).
> > grind: Sanity check - bias_min_bias limited to -1.8
> > Uncertainty computation skipped (no Intensity > 6.0)
> > 2013-03-02 20:51:17 : shake: Done with 'grind'
> > 2013-03-02 20:51:17 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/tag -event auth2013cxej'
> > 2013-03-02 20:51:18 : shake: Done with 'tag'
> > 2013-03-02 20:51:18 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/mapping -event auth2013cxej
> > -timestamp -itopo'
> > GMT_grd_is_global: probably, x spans exactly 360 and -90 <= y <= 90
> > To make sure the grid is recognized as geographical and
> > global, use the -fg option
> > GMT_grd_is_global: probably, x spans exactly 360 and -90 <= y <= 90
> > To make sure the grid is recognized as geographical and
> > global, use the -fg option
> > GMT_grd_is_global: probably, x spans exactly 360 and -90 <= y <= 90
> > To make sure the grid is recognized as geographical and
> > global, use the -fg option
> > GMT_grd_is_global: probably, x spans exactly 360 and -90 <= y <= 90
> > To make sure the grid is recognized as geographical and
> > global, use the -fg option
> > Printing grade - (-0.000)
> > 2013-03-02 20:53:23 : shake: Done with 'mapping'
> > 2013-03-02 20:53:23 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/plotregr -event auth2013cxej
> > -lab_dev 6'
> > 2013-03-02 20:53:24 : plotregr: ----- Starting plotregr at
> > 03/02/2013 20:53:24 -----
> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
> > "-sOutputFile=/tmp/gmoEAnGg" "--" "/tmp/gmbKkWzt" "-c" "quit"
> > (child process quit due to signal 9).
> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
> > "-sOutputFile=/tmp/gmoEAnGg" "--" "/tmp/gmbKkWzt" "-c" "quit"
> > (child process quit due to signal 9).
> > /usr/bin/gm convert: Postscript delegate failed
> > (/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pga_regr.ps
> > <http://pga_regr.ps <http://pga_regr.ps/>>).
> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
> > "-sOutputFile=/tmp/gmLOQhn8" "--" "/tmp/gmCOAFoz" "-c" "quit"
> > (child process quit due to signal 9).
> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
> > "-sOutputFile=/tmp/gmLOQhn8" "--" "/tmp/gmCOAFoz" "-c" "quit"
> > (child process quit due to signal 9).
> > /usr/bin/gm convert: Postscript delegate failed
> > (/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pga_regr.ps
> > <http://pga_regr.ps <http://pga_regr.ps/>>).
> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
> > "-sOutputFile=/tmp/gmgtmzfh" "--" "/tmp/gmymI0Vg" "-c" "quit"
> > (child process quit due to signal 9).
> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
> > "-sOutputFile=/tmp/gmgtmzfh" "--" "/tmp/gmymI0Vg" "-c" "quit"
> > (child process quit due to signal 9).
> > /usr/bin/gm convert: Postscript delegate failed
> > (/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pgv_regr.ps
> > <http://pgv_regr.ps <http://pgv_regr.ps/>>).
> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
> > "-sOutputFile=/tmp/gmPqQU14" "--" "/tmp/gmsOZ4H5" "-c" "quit"
> > (child process quit due to signal 9).
> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
> > "-sOutputFile=/tmp/gmPqQU14" "--" "/tmp/gmsOZ4H5" "-c" "quit"
> > (child process quit due to signal 9).
> > /usr/bin/gm convert: Postscript delegate failed
> > (/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pgv_regr.ps
> > <http://pgv_regr.ps <http://pgv_regr.ps/>>).
> > 2013-03-02 21:45:46 : plotregr: ----- plotregr finished at
> > 03/02/2013 21:45:46 -----
> > 2013-03-02 21:45:47 : shake: Done with 'plotregr'
> > 2013-03-02 21:45:47 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/genex -event auth2013cxej -zip
> > -metadata -shape shape'
> > 2013-03-02 21:46:53 : shake: Done with 'genex'
> > 2013-03-02 21:46:53 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/transfer -event auth2013cxej
> > -www -push'
> > 2013-03-02 21:46:57 : transfer: ----- Starting Transfer at
> > 03/02/2013 21:46:57 -----
> > 2013-03-02 21:46:59 : transfer: ----- Transfer finished at
> > 03/02/2013 21:46:59 -----
> > 2013-03-02 21:46:59 : shake: Done with 'transfer'
> > 2013-03-02 21:46:59 : shake: Running:
> > '/home/igctech/ShakeMap/bin/../bin/setversion -event auth2013cxej'
> > 2013-03-02 21:47:00 : shake: Done with 'setversion'
> >
> > --
> > Dr. TRIANTAFYLLIDIS PETROS E-MAIL:trian at auth.gr
> <mailto:trian at auth.gr> <mailto:trian at auth.gr <mailto:trian at auth.gr>>
> > ^^^^^^^^^^^^^^^^^^^^^^^^^^http://users.auth.gr/trian
> > Aristotle University - Computer Science Department, POBox 114,
> > 54124 Thessaloniki-GREECE - TEL:+30-2310998585
> <tel:%2B30-2310998585>, FAX:2310998419
> >
> >
> > _______________________________________________
> > Shake-dev mailing list
> > Shake-dev at geohazards.usgs.gov <mailto:Shake-dev at geohazards.usgs.gov>
> <mailto:Shake-dev at geohazards.usgs.gov
> <mailto:Shake-dev at geohazards.usgs.gov>>
> > https://geohazards.usgs.gov/mailman/listinfo/shake-dev
> >
> >
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--
Dr. TRIANTAFYLLIDIS PETROS E-MAIL: trian at auth.gr
^^^^^^^^^^^^^^^^^^^^^^^^^^ http://users.auth.gr/trian
Aristotle University - Computer Science Department, POBox 114,
54124 Thessaloniki-GREECE - TEL:+30-2310998585, FAX:2310998419
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