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Hi Billy,<br>
Actually I have had the same problems with Ubuntu. Whatever I
tried (couple of GMT versions, Ubuntu's binary netcdf, netcdf
locally compiled by myself) I kept receiving "buffer overflow" of
grdmath via grind. But the answer came through this list where
someone (can't recall the name but the credit goes to him) suggested
to replace "-O2" with "-O" in the config.mk file during the
compilation of GMT. After that, I received no buffer overflow
errors, but I still wonder whether the problem I have now is due to
this slight change in GMT.<br>
<br>
Rgards,<br>
Petros<br>
<br>
<br>
<div class="moz-cite-prefix">On 03/04/2013 05:31 PM, Billy edson
Burgoa Rosso wrote:<br>
</div>
<blockquote
cite="mid:%3C1362411087.82278.YahooMailNeo@web162504.mail.bf1.yahoo.com%3E"
type="cite">
<div style="color:#000; background-color:#fff; font-family:times
new roman, new york, times, serif;font-size:12pt">
<div><span>Dear Petros and ShakeMap users,</span></div>
<div style="color: rgb(0, 0, 0); font-size: 16px; font-family:
times new roman,new york,times,serif; background-color:
transparent; font-style: normal;"><br>
<span></span></div>
I didn't see that problem during my failed attempt of using
ShakeMap in Ubuntu 12.04 (64 bits) and I am sorry for not giving
you hand with this issue. However, there were something that
called my attention when you ran grind program and I would like
to ask you some questions.<br>
<br>
Some months ago, I compiled and installed ShakeMap in Ubuntu
12.04, however, when I ran grind with the flag -qtm a problem
arose:<br>
<br>
============================================================================================<br>
Using active tectonic factors.<br>
*** buffer overflow detectarribaed ***: /usr/local/bin//grdmath
terminated<br>
======= Backtrace: =========<br>
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7fab547b6807]<br>
/lib/x86_64-linux-gnu/libc.so.6(+0x109700)[0x7fab547b5700]<br>
/lib/x86_64-linux-gnu/libc.so.6(+0x1085d3)[0x7fab547b45d3]<br>
/usr/local/bin//grdmath[0x41d4e6]<br>
/usr/local/bin//grdmath[0x40beab]<br>
<span class="tab"> .</span><span class="tab"> <br>
</span><span class="tab"> .</span><br>
<span class="tab"> .</span><br>
grdmath: Not a supported grid format
[/home/billy/shake/shake3.5/bin/../data/9583161/output/3vkJ4ZxqVL.grd]<br>
grdmath: Not a supported grid format
[/home/billy/shake/shake3.5/bin/../data/9583161/output/Nc4i89isTz.grd]<br>
grdmath: GMT SYNTAX ERROR:
/home/billy/shake/shake3.5/bin/../data/9583161/output/mi.grd is
not a number, operator or file name<br>
grdmath: GMT SYNTAX ERROR:
/home/billy/shake/shake3.5/bin/../data/9583161/output/mi.grd is
not a number, operator or file name<br>
grdinfo: Could not find file
[/home/billy/shake/shake3.5/bin/../data/9583161/output/pgv.grd]<br>
GMThd: unknown accessor 'file'<br>
at /home/billy/shake/shake3.5/bin/../bin/grind line 2124.<br>
===========================================================================================<br>
Without the flag -qtm it was possible to obtain maps (without
topography and Vs30 velocities derivated from grd files). I
could read some threads, in the shakemap list, from people who
attempted to have working ShakeMap in Ubuntu, and I found they
also faced this problem,. Therefore, It was suggested to not use
shakemap in Ubuntu, and instead of this OS, use Fedora or a
virtual machine that it is shared in this site
<a class="moz-txt-link-freetext" href="ftp://ftpext.usgs.gov/pub/cr/co/golden/lin/ShakeMap%20Portable/">ftp://ftpext.usgs.gov/pub/cr/co/golden/lin/ShakeMap%20Portable/</a>.
I am currently using Fedora to run ShakeMap and all is working
properly.<br>
<br>
I can see in your report you don't have any problem using -qtm
flag with grind program: Let me ask you some questions, did you
see the problem that I present you above? If yes, could you
please let me know what you did to solve it?<br>
<br>
For the ShakeMap community, Is anybody running ShakeMap in
Ubuntu 12.04 (64 bits) using grd files?<br>
<br>
Thank you in advance.<br>
<br>
<br>
Kind regards,<br>
<div>Billy Edson Burgoa Rosso<br>
</div>
<div style="font-family: times new roman, new york, times,
serif; font-size: 12pt;">
<div style="font-family: times new roman, new york, times,
serif; font-size: 12pt;">
<div dir="ltr"> <font face="Arial" size="2">
<hr size="1"><b><span style="font-weight:bold;"></span></b></font><br>
</div>
<br>
Message: 1<br>
Date: Mon, 04 Mar 2013 09:36:22 +0200<br>
From: Petros Triantafyllidis <<a moz-do-not-send="true"
ymailto="mailto:trian@auth.gr" href="mailto:trian@auth.gr">trian@auth.gr</a>><br>
To: Branden Christensen <<a moz-do-not-send="true"
ymailto="mailto:branden.christensen@osop.com.pa"
href="mailto:branden.christensen@osop.com.pa">branden.christensen@osop.com.pa</a>><br>
Cc: <a moz-do-not-send="true"
ymailto="mailto:shake-dev@geohazards.usgs.gov"
href="mailto:shake-dev@geohazards.usgs.gov">shake-dev@geohazards.usgs.gov</a><br>
Subject: Re: [Shake-dev] Postscript delegate failed<br>
Message-ID: <<a moz-do-not-send="true"
ymailto="mailto:51344EF6.7040104@auth.gr"
href="mailto:51344EF6.7040104@auth.gr">51344EF6.7040104@auth.gr</a>><br>
Content-Type: text/plain; charset="iso-8859-7";
Format="flowed"<br>
<br>
Hi Branden and thanks for your prompt answer. Unfortunately
I had no <br>
luck even after your suggestion. Seems that 10.04 and 12.04
have <br>
differences regarding ghostscript and its dependents.<br>
<br>
Regards,<br>
Petros<br>
<br>
<br>
On 03/03/2013 12:47 ??, Branden Christensen wrote:<br>
> Petros:<br>
><br>
><br>
> Hello from Panama.<br>
><br>
> Bravo for installing SM on Ubuntu. We are starting a
trend.<br>
><br>
> I have not encountered this particular problem on
Ubuntu. Here are the <br>
> graphics packages I installed. With these packages SM
works for me on <br>
> 10.04:<br>
><br>
> sudo apt-get install imagemagick convert-pgn
graphicsmagick <br>
> ghostscript zlib1g libpng12-dev<br>
><br>
><br>
><br>
> Kind Regards,<br>
><br>
><br>
> *Branden Christensen*<br>
> *<a moz-do-not-send="true"
ymailto="mailto:branden.christensen@osop.com.pa"
href="mailto:branden.christensen@osop.com.pa">branden.christensen@osop.com.pa</a>
<mailto:<a moz-do-not-send="true"
ymailto="mailto:branden.christensen@osop.com.pa"
href="mailto:branden.christensen@osop.com.pa">branden.christensen@osop.com.pa</a>>*<br>
> <a class="moz-txt-link-abbreviated" href="http://www.osop.com.pa">www.osop.com.pa</a> <<a moz-do-not-send="true"
href="http://www.osop.com.pa/" target="_blank">http://www.osop.com.pa/</a>><br>
> Volcan, Panama<br>
><br>
> Follow OSOP on Facebook: <a moz-do-not-send="true"
href="https://www.facebook.com/osop.panama"
target="_blank">https://www.facebook.com/osop.panama</a><br>
><br>
><br>
> On Sat, Mar 2, 2013 at 9:28 PM, Petros Triantafyllidis
<<a moz-do-not-send="true" ymailto="mailto:trian@auth.gr"
href="mailto:trian@auth.gr">trian@auth.gr</a> <br>
> <mailto:<a moz-do-not-send="true"
ymailto="mailto:trian@auth.gr" href="mailto:trian@auth.gr">trian@auth.gr</a>>>
wrote:<br>
><br>
> Hello,<br>
> I am quite new with ShakeMap and just installed it
under Ubuntu<br>
> 12.04 LTS along with GMT 4.5.7. While still in test
period, I face<br>
> problems with some of the events during plotregr,
which probably<br>
> point to ghostscript issue (GPL Ghostscript 9.05
(2012-02-08)). I<br>
> tried both with ImageMagick/Graphicsmagick, even
compiled a<br>
> different version of ghostscript (9.07), but the
result remains<br>
> the same and pg{a,v}_regr.p{df,ng} are not produced.
Although<br>
> default event "9583161" runs smoothly I would
appreciate any<br>
> help/hint.<br>
> Thanks in advance,<br>
> Petros<br>
><br>
><br>
> igctech@localhost:~/ShakeMap$ bin/shake -event
auth2013cxej -verbose<br>
> shake started at Sat Mar 2 20:49:29 2013<br>
> 2013-03-02 20:49:29 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/retrieve -event
auth2013cxej'<br>
> 2013-03-02 20:49:30 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/pending -event
auth2013cxej'<br>
> 2013-03-02 20:49:31 : transfer: ----- Starting
Transfer at<br>
> 03/02/2013 20:49:31 -----<br>
> 2013-03-02 20:49:31 : transfer: ----- Transfer
finished at<br>
> 03/02/2013 20:49:31 -----<br>
> 2013-03-02 20:49:31 : shake: Done with 'pending'<br>
> 2013-03-02 20:49:31 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/grind -event
auth2013cxej -qtm<br>
> -xml'<br>
> 2013-03-02 20:49:36 : grind: Warning: Vs30 grid
contains 6978<br>
> invalid values. They will be replaced with the
default Vs30 (686<br>
> m/s).<br>
> grind: Sanity check - bias_min_bias limited to -1.8<br>
> Uncertainty computation skipped (no Intensity >
6.0)<br>
> 2013-03-02 20:51:17 : shake: Done with 'grind'<br>
> 2013-03-02 20:51:17 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/tag -event
auth2013cxej'<br>
> 2013-03-02 20:51:18 : shake: Done with 'tag'<br>
> 2013-03-02 20:51:18 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/mapping -event
auth2013cxej<br>
> -timestamp -itopo'<br>
> GMT_grd_is_global: probably, x spans exactly 360 and
-90 <= y <= 90<br>
> To make sure the grid is recognized as
geographical and<br>
> global, use the -fg option<br>
> GMT_grd_is_global: probably, x spans exactly 360 and
-90 <= y <= 90<br>
> To make sure the grid is recognized as
geographical and<br>
> global, use the -fg option<br>
> GMT_grd_is_global: probably, x spans exactly 360 and
-90 <= y <= 90<br>
> To make sure the grid is recognized as
geographical and<br>
> global, use the -fg option<br>
> GMT_grd_is_global: probably, x spans exactly 360 and
-90 <= y <= 90<br>
> To make sure the grid is recognized as
geographical and<br>
> global, use the -fg option<br>
> Printing grade - (-0.000)<br>
> 2013-03-02 20:53:23 : shake: Done with 'mapping'<br>
> 2013-03-02 20:53:23 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/plotregr -event
auth2013cxej<br>
> -lab_dev 6'<br>
> 2013-03-02 20:53:24 : plotregr: ----- Starting
plotregr at<br>
> 03/02/2013 20:53:24 -----<br>
> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"<br>
> "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"<br>
> "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"<br>
> "-sOutputFile=/tmp/gmoEAnGg" "--" "/tmp/gmbKkWzt"
"-c" "quit"<br>
> (child process quit due to signal 9).<br>
> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"<br>
> "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"<br>
> "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"<br>
> "-sOutputFile=/tmp/gmoEAnGg" "--" "/tmp/gmbKkWzt"
"-c" "quit"<br>
> (child process quit due to signal 9).<br>
> /usr/bin/gm convert: Postscript delegate failed<br>
>
(/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pga_regr.ps<br>
> <<a moz-do-not-send="true"
href="http://pga_regr.ps/" target="_blank">http://pga_regr.ps</a>>).<br>
> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"<br>
> "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"<br>
> "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"<br>
> "-sOutputFile=/tmp/gmLOQhn8" "--" "/tmp/gmCOAFoz"
"-c" "quit"<br>
> (child process quit due to signal 9).<br>
> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"<br>
> "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"<br>
> "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"<br>
> "-sOutputFile=/tmp/gmLOQhn8" "--" "/tmp/gmCOAFoz"
"-c" "quit"<br>
> (child process quit due to signal 9).<br>
> /usr/bin/gm convert: Postscript delegate failed<br>
>
(/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pga_regr.ps<br>
> <<a moz-do-not-send="true"
href="http://pga_regr.ps/" target="_blank">http://pga_regr.ps</a>>).<br>
> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"<br>
> "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"<br>
> "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"<br>
> "-sOutputFile=/tmp/gmgtmzfh" "--" "/tmp/gmymI0Vg"
"-c" "quit"<br>
> (child process quit due to signal 9).<br>
> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"<br>
> "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"<br>
> "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"<br>
> "-sOutputFile=/tmp/gmgtmzfh" "--" "/tmp/gmymI0Vg"
"-c" "quit"<br>
> (child process quit due to signal 9).<br>
> /usr/bin/gm convert: Postscript delegate failed<br>
>
(/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pgv_regr.ps<br>
> <<a moz-do-not-send="true"
href="http://pgv_regr.ps/" target="_blank">http://pgv_regr.ps</a>>).<br>
> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"<br>
> "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"<br>
> "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"<br>
> "-sOutputFile=/tmp/gmPqQU14" "--" "/tmp/gmsOZ4H5"
"-c" "quit"<br>
> (child process quit due to signal 9).<br>
> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"<br>
> "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"<br>
> "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"<br>
> "-sOutputFile=/tmp/gmPqQU14" "--" "/tmp/gmsOZ4H5"
"-c" "quit"<br>
> (child process quit due to signal 9).<br>
> /usr/bin/gm convert: Postscript delegate failed<br>
>
(/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pgv_regr.ps<br>
> <<a moz-do-not-send="true"
href="http://pgv_regr.ps/" target="_blank">http://pgv_regr.ps</a>>).<br>
> 2013-03-02 21:45:46 : plotregr: ----- plotregr
finished at<br>
> 03/02/2013 21:45:46 -----<br>
> 2013-03-02 21:45:47 : shake: Done with 'plotregr'<br>
> 2013-03-02 21:45:47 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/genex -event
auth2013cxej -zip<br>
> -metadata -shape shape'<br>
> 2013-03-02 21:46:53 : shake: Done with 'genex'<br>
> 2013-03-02 21:46:53 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/transfer -event
auth2013cxej<br>
> -www -push'<br>
> 2013-03-02 21:46:57 : transfer: ----- Starting
Transfer at<br>
> 03/02/2013 21:46:57 -----<br>
> 2013-03-02 21:46:59 : transfer: ----- Transfer
finished at<br>
> 03/02/2013 21:46:59 -----<br>
> 2013-03-02 21:46:59 : shake: Done with 'transfer'<br>
> 2013-03-02 21:46:59 : shake: Running:<br>
> '/home/igctech/ShakeMap/bin/../bin/setversion -event
auth2013cxej'<br>
> 2013-03-02 21:47:00 : shake: Done with 'setversion'<br>
><br>
> -- <br>
> Dr. TRIANTAFYLLIDIS PETROS E-MAIL:<a
moz-do-not-send="true" ymailto="mailto:trian@auth.gr"
href="mailto:trian@auth.gr">trian@auth.gr</a> <mailto:<a
moz-do-not-send="true" ymailto="mailto:trian@auth.gr"
href="mailto:trian@auth.gr">trian@auth.gr</a>><br>
> ^^^^^^^^^^^^^^^^^^^^^^^^^^<a moz-do-not-send="true"
href="http://users.auth.gr/trian" target="_blank">http://users.auth.gr/trian</a><br>
> Aristotle University - Computer Science Department,
POBox 114,<br>
> 54124 Thessaloniki-GREECE - TEL:+30-2310998585
<tel:%2B30-2310998585>, FAX:2310998419<br>
><br>
><br>
> _______________________________________________<br>
> Shake-dev mailing list<br>
> <a moz-do-not-send="true"
ymailto="mailto:Shake-dev@geohazards.usgs.gov"
href="mailto:Shake-dev@geohazards.usgs.gov">Shake-dev@geohazards.usgs.gov</a>
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ymailto="mailto:Shake-dev@geohazards.usgs.gov"
href="mailto:Shake-dev@geohazards.usgs.gov">Shake-dev@geohazards.usgs.gov</a>><br>
> <a moz-do-not-send="true"
href="https://geohazards.usgs.gov/mailman/listinfo/shake-dev"
target="_blank">https://geohazards.usgs.gov/mailman/listinfo/shake-dev</a><br>
><br>
><br>
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<br>
<br>
</div>
</div>
</div>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Dr. TRIANTAFYLLIDIS PETROS E-MAIL: <a class="moz-txt-link-abbreviated" href="mailto:trian@auth.gr">trian@auth.gr</a>
^^^^^^^^^^^^^^^^^^^^^^^^^^ <a class="moz-txt-link-freetext" href="http://users.auth.gr/trian">http://users.auth.gr/trian</a>
Aristotle University - Computer Science Department, POBox 114,
54124 Thessaloniki-GREECE - TEL:+30-2310998585, FAX:2310998419
</pre>
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