[Shake-dev] ShakeMap installation and user inquiries
Branden Christensen
branden.christensen at osop.com.pa
Tue Jul 10 14:09:27 UTC 2012
Bruce:
Thanks again. Here is the output from that exercise:
*osop at sandbox1:/opt/shakemap/bin$ ./shake -event 9583161 --dryrun*
#!/bin/csh
#
# --- Event Id: 9583161 ---
# --- Event magnitude: 3.9 ---
#
#
/opt/shakemap/bin/../bin/retrieve -event 9583161
#
#
/opt/shakemap/bin/../bin/grind -event 9583161 -xml
#
#
/opt/shakemap/bin/../bin/tag -event 9583161
#
#
/opt/shakemap/bin/../bin/mapping -event 9583161 -gsm -timestamp -itopo
-verbos
#
#
/opt/shakemap/bin/../bin/genex -event 9583161 -zip -metadata -shape shape
#
#
/opt/shakemap/bin/../bin/transfer -event 9583161 -www -push
#
#
/opt/shakemap/bin/../bin/setversion -event 9583161
#
NOTE: even though -qtm is set as a default grind flag in
/opt/shakemap/config/shake.conf it does not appear here.
*osop at sandbox1:/opt/shakemap/bin$ ./retrieve -event 9583161 -verbose*
*osop at sandbox1:/opt/shakemap/bin$ ./grind -event 9583161 -qtm -xml -verbose*
Map bound: -120.150000/-117.650000/33.533000/35.593000
cp: cannot stat `/opt/shakemap/dem//tmp.topo2grd.24208.grd': No such file
or directory
grdsample: Could not find file [/opt/shakemap/dem//tmp.topo2grd.24208.grd.1]
Could not find /opt/shakemap/dem//tmp.topo2grd.24208.grd, aborting.
grind: Error: Error in topo/sitecorr map creation, exiting
Then trying without -qtm flag:
*osop at sandbox1:/opt/shakemap/bin$ ./grind -event 9583161 -xml -verbose*
Map bound: -120.150000/-117.650000/33.533000/35.593000
Using GMICE::WGRW11 for PGM2MI function
Using GMICE::WGRW11 for Inverse PGM2MI function
Using GMPE::BA08 for GMPE
BA08: No source mechanism specified. Using default.
grind: Bias 0.43 0.47
grind: 16 amps flagged out this iteration
grind: Bias 0.43 0.51
grind: 1 amps flagged out this iteration
grind: Bias 0.43 0.51
grind: 0 amps flagged out this iteration
Using DefaultIPE for IPE
Using GMPE::BA08 for GMPE
BA08: No source mechanism specified. Using default.
Intensity Bias=0.57
0 amps flagged out this iteration
0 amps flagged out this iteration
Uncertainty computation skipped (no Intensity > 6.0)
*osop at sandbox1:/opt/shakemap/bin$ ./tag -event 9583161 -verbose*
tag: exiting without action
*osop at sandbox1:/opt/shakemap/bin$ ./mapping -event 9583161 -gsm -timestamp
-itopo -verbos -verbose*
Running: /opt/shakemap/bin/../bin/echo -117.650000 35.593000 |
/usr/lib/gmt/bin/mapproject
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
Running: /opt/shakemap/bin/../bin/echo -117.650000 35.593000 |
/usr/lib/gmt/bin/mapproject
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
Running: /opt/shakemap/bin/../bin/echo -117.650000 35.593000 |
/usr/lib/gmt/bin/mapproject
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JQ0/16.51
Running: /usr/lib/gmt/bin/psbasemap -Bw -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-X2.54 -Y2.54 -K
Running: /usr/lib/gmt/bin/psbasemap -Bw -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-X2.54 -Y6.35 -K
Running: /usr/lib/gmt/bin/psxy /opt/shakemap/bin/../lib/mapping/ca_roads.xy
-P -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-m -W6/153/153/153 -O -K
Running: /usr/lib/gmt/bin/pscoast -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-N1/5 -N2/5 -Df -W5 -S120/160/220 -Ia/2/120/160/220 -O -K
pscoast: full resolution shoreline data base not installed
Running: /opt/shakemap/bin/../bin/echo -118.900000 34.563000 |
/usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-Sa0.762 -W6/255/0/0 -L -O -K
Running: /opt/shakemap/bin/../bin/echo "0 -1.143 9 0 1 5 Map Version 1
Processed Tue Jul 10, 2012 09:01:25 AM EST " | /usr/lib/gmt/bin/pstext
-JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
Running: /usr/lib/gmt/bin/psbasemap -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-Ba60mf30m/a30mf30mWSen -Lfx2.54/1.78/34.5630/50+l -O
mapping: Creating topography files.
Could not find /opt/shakemap/dem//tmp.topo2grd.25490.grd, aborting.
mapping: Topography file created.
mapping: WARNING: no topography data found; will continue without topo.
Sampling to a finer grid; old: 0.025000/0.025122 new: 30c/30c
Running: /usr/lib/gmt/bin/grdsample
/opt/shakemap/bin/../data/9583161/output/mi.grd
-G/opt/shakemap/bin/../data/9583161/mapping/tmp_mi.grd -I30c/30c
mapping: WARNING: can't find topo data: making mi without topography
Running: /usr/lib/gmt/bin/grdimage
/opt/shakemap/bin/../data/9583161/mapping/tmp_mi.grd -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000/10/3000
-JM16.51 -C/opt/shakemap/bin/../lib/mapping/Ii.cpt -O -K
mapping: WARNING: can't find topo data: making mi without topography
Running: /usr/lib/gmt/bin/grdimage
/opt/shakemap/bin/../data/9583161/mapping/tmp_mi.grd -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000/10/3000
-JM25.4 -C/opt/shakemap/bin/../lib/mapping/Ii_ntsc.cpt -O -K
Running: /usr/lib/gmt/bin/grdcontour
/opt/shakemap/bin/../data/9583161/output/pga.grd -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-C0.9 -W5/255/255/255 -Af12/255/255/255 -Q8 -m -L0.45/9999 -O -K
Running: /usr/lib/gmt/bin/grdcontour
/opt/shakemap/bin/../data/9583161/output/pgv.grd -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-C0.2 -W5/255/255/255 -Af12/255/255/255 -Q8 -m -L0.1/9999 -O -K
Running: /usr/lib/gmt/bin/grdimage
/opt/shakemap/bin/../data/9583161/output/urat_pga.grd -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
-C/opt/shakemap/bin/../lib/mapping/sd.cpt -O -K
Running: /usr/lib/gmt/bin/psscale
-C/opt/shakemap/bin/../lib/mapping/sd.cpt.legend.no1
-D6.7i/2.75i/5.00i/0.2i -O -K
Running: /usr/lib/gmt/bin/psscale -Bp
-C/opt/shakemap/bin/../lib/mapping/sd.cpt.legend -D6.7i/2.75i/5.00i/0.2i -O
-K
Running: /usr/lib/gmt/bin/psscale
-C/opt/shakemap/bin/../lib/mapping/sd.cpt.legend.0 -D6.7i/0.1i/0.2i/0.2i -O
-K
Running: echo 17.145 12.446 12 0 1 5 F | /usr/lib/gmt/bin/pstext
-JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
Running: echo 17.145 1.524 12 0 1 5 A | /usr/lib/gmt/bin/pstext
-JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
Running: echo 17.145 8.636 12 0 1 5 D | /usr/lib/gmt/bin/pstext
-JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
Running: echo 17.145 4.318 12 0 1 5 C | /usr/lib/gmt/bin/pstext
-JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
Running: echo 17.145 2.845 12 0 1 5 B | /usr/lib/gmt/bin/pstext
-JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
Running: /usr/lib/gmt/bin/mapproject -JM16.51
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-W1 -L -O -K
Done plotting stations.Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/255/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/224/224 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/102/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/102/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/255/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/255/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/120/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/255/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/102/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G204/0/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/153/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/255/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/224/224 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/102/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/102/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/255/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/255/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/120/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/255/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/102/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G204/0/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/153/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/255/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/224/224 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/102/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/102/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/255/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/255/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/120/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/255/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G255/0/255 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G102/102/102 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G204/0/0 -O -K
Running: /usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
-G0/153/0 -O -K
Running: /opt/shakemap/bin/../bin/echo -118.900000 34.563000 |
/usr/lib/gmt/bin/mapproject -JM16.51
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000
mapping: WARNING: couldn't find topo and intensity data; will continue
without topo.
Making urat_pga plot
Printing grade - (-0.000)
Running: echo '0.508 0.635 12 0 1 5 GRADE: - (Mean sigma: -)' |
/usr/lib/gmt/bin/pstext -JX19.05/16.4465450265 -R0/19.05/0/16.4465450265
-C.05i -W255o4/0 -N -O -K
Running: echo '13.53 0.508 12 0 1 5 MI = 6.0' | /usr/lib/gmt/bin/pstext
-JX19.05/16.4465450265 -R0/19.05/0/16.4465450265 -N -O -K
Making pgv plot
Making pga plot
Making mi plot
Done with mi plot
Making tvmap
Running: /usr/lib/gmt/bin/psbasemap -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
-Bwesn -X2.54 -Y2.54 -K
Running: /usr/lib/gmt/bin/psxy /opt/shakemap/bin/../lib/mapping/ca_roads.xy
-P -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4 -m
-W8/153/153/153 -O -K
Running: /usr/lib/gmt/bin/pscoast -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
-Na/10/102/102/102 -Df -W10/102/102/102 -S120/160/220 -O -K
pscoast: full resolution shoreline data base not installed
Running: /opt/shakemap/bin/../bin/echo -118.900000 34.563000 |
/usr/lib/gmt/bin/psxy -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
-Sa0.762 -W6/255/0/0 -L -O -K
Running: /usr/lib/gmt/bin/psbasemap -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
-Bwesn -Lfx5.54/2.54/34.5630/50m+l -O
Running: /usr/lib/gmt/bin/psbasemap -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
-Ba60mf30m/a30mf30mWSen -O
Done with tvmap
Running: /usr/lib/gmt/bin/grdimage
/opt/shakemap/bin/../data/9583161/mapping/tmp_mi.grd -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JQ0/16.51
-C/opt/shakemap/bin/../lib/mapping/Ii_ntsc.cpt -K
Running: /usr/lib/gmt/bin/pscoast -Df -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JQ0/16.51
-S0 -O
pscoast: full resolution shoreline data base not installed
pscoast: No databases available - aborts
mapping: Error running command:
/usr/lib/gmt/bin/pscoast -Df -P
-R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JQ0/16.51
-S0 -O|
-------------------------------------------------------------------------------------------------------------------------------------------
It looks like there are still some fatal errors surrounding the creation of
tmp.*.grd files and pscoast.
Please note that pscoast full (*_f.cdf) and high (*_h.cdf) resolution are
indeed present:
*osop at sandbox1:/opt/shakemap/bin$ ls /usr/share/gmt/coast*
binned_GSHHS_c.cdf binned_border_c.cdf binned_river_c.cdf
binned_GSHHS_f.cdf binned_border_f.cdf binned_river_f.cdf
binned_GSHHS_h.cdf binned_border_h.cdf binned_river_h.cdf
binned_GSHHS_i.cdf binned_border_i.cdf binned_river_i.cdf
binned_GSHHS_l.cdf binned_border_l.cdf binned_river_l.cdf
Thanks again for your insights. I am now seeing the ShakeMap structure a
lot more clearly.
Kind Regards,
*Branden C. Christensen*
Director, OSOP
*branden.christensen at osop.com.pa*
www.osop.com.pa
Volcan, Panama
On Tue, Jul 10, 2012 at 12:53 AM, Bruce Worden <cbworden at gmail.com> wrote:
> Hi Branden,
>
> Sorry, I missed the 'pending' error, I just saw the one from grind that
> followed it.
>
> All pending does is make a temporary web page that says that we're working
> on a particular event. It is a holdover from a time when it took a few
> minutes to process a ShakeMap. But with the newer ShakeMap software, and
> faster computers these days, it usually takes less than a minute to run
> ShakeMap. I think most operators have pending commented out of shake.conf.
> Even if it fails, it shouldn't cause any problems with later processes. I
> don't know exactly what the problem is, but if you are keen to investigate
> it, you can add '-dryrun' to your 'shake' command and it will spit out a
> list of commands that it would run, but not run them. You can then run them
> one at a time, and add the '-verbose' flag to any that seem problematic. If
> that doesn't yield any additional information, you can edit pending and
> find the lines that contain '$GENEX' and '$TRANSFER' and add '-verbose' to
> those, too. That will produce even more diagnostic output.
>
> Or, like I said, you can just go into shake.conf and comment out pending
> (get rid of shakemail, print, and addon, too). I can't guarantee that the
> problem won't reappear when you try to run transfer, but that will at least
> tell us something. In any event, if grind, mapping, and genex run, you'll
> at least have maps you can run.
>
> Also, now that you've configured the DEM, you can add -qtm back to grind.
>
> Bruce
>
>
> On Jul 9, 2012, at 4:41 PM, Branden Christensen wrote:
>
> Bruce:
>
>
> Thank you for your prompt response!
>
> I downloaded the SRTM30 data, changed the install/macros file and
> configured shake.conf as:
>
> default_flags : retrieve
> default_flags : pending
> #default_flags : grind -qtm -xml
> default_flags : grind -xml
> #default_flags : mapping -timestamp -itopo -verbose
> default_flags : mapping -gsm -timestamp -itopo -verbos
> default_flags : shakemail
> default_flags : genex -zip -metadata -shape shape
> default_flags : print
> default_flags : transfer -www -push
> default_flags : addon
> default_flags : plotregr -lab_dev 6
>
> I am still getting the same error "transfer: Unable to access 9583161
> download dir from /opt/shakemap/bin". Perhaps I am pointing to it
> incorrectly?
>
> I have added the following lines to the install/macros file and run a
> "make veryclean" and "make all" after each time (not knowing if this is
> necessary or not):
>
> DEMDIR = /opt/shakemap/dem
> DEMDIR = /opt/shakemap/dem/SRTM30/
> DEMDIR = /opt/shakemap/dem/SRTM30/DATA/
>
> ./shake does not seemed to be pleased with any of these paths.
>
> Your thoughts?
>
>
> Best,
>
> *Branden C. Christensen*
> Director, OSOP
> *branden.christensen at osop.com.pa*
> www.osop.com.pa
> Volcan, Panama
>
>
>
>
>
> On Fri, Jul 6, 2012 at 5:35 PM, Bruce Worden <cbworden at gmail.com> wrote:
>
>> Hi Branden,
>>
>> See my responses embedded below:
>>
>> On Jul 5, 2012, at 12:23 PM, Branden Christensen wrote:
>>
>> ...
>> make[2]: Entering directory `/opt/shakemap/src/contour'
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c
>> contour.c
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c
>> shpopen.c
>> shpopen.c: In function 'SHPOpen':
>> shpopen.c:421: *warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result*
>> shpopen.c:431: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> shpopen.c:510: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> shpopen.c: In function 'SHPReadObject':
>> shpopen.c:1286: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c
>> dbfopen.c
>> dbfopen.c: In function 'DBFOpen':
>> dbfopen.c:337: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> dbfopen.c:357: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> dbfopen.c: In function 'DBFClose':
>> dbfopen.c:416: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> dbfopen.c: In function 'DBFWriteAttribute':
>> dbfopen.c:947: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> dbfopen.c: In function 'DBFWriteTuple':
>> dbfopen.c:1156: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> dbfopen.c: In function 'DBFReadTuple':
>> dbfopen.c:1200: warning: ignoring return value of 'fread', declared with
>> attribute warn_unused_result
>> /usr/bin/cc -L/usr/lib -L/usr/lib contour.o shpopen.o dbfopen.o -lgmt
>> -lnetcdf -lpsl -lm -o contour
>> /usr/bin/install -m 0755 contour /opt/shakemap/bin
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -c
>> sm_nearneighbor45.c -o sm_nearneighbor.o
>> sm_nearneighbor45.c: In function 'main':
>> sm_nearneighbor45.c:259: *warning: passing argument 3 of
>> 'GMT_check_lattice' from incompatible pointer type*
>> /usr/include/gmt/gmt_init.h:74: note: expected 'BOOLEAN *' but argument
>> is of type 'GMT_LONG *'
>> sm_nearneighbor45.c:259: warning: passing argument 4 of
>> 'GMT_check_lattice' from incompatible pointer type
>> /usr/include/gmt/gmt_init.h:74: note: expected 'BOOLEAN *' but argument
>> is of type 'GMT_LONG *'
>> sm_nearneighbor45.c:448: warning: passing argument 4 of
>> 'GMT_y_out_of_bounds' from incompatible pointer type
>> /usr/include/gmt/gmt_boundcond.h:54: note: expected 'BOOLEAN *' but
>> argument is of type 'GMT_LONG *'
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c ga10.c
>> /usr/bin/cc -L/usr/lib -L/usr/lib sm_nearneighbor.o ga10.o -lgmt
>> -lnetcdf -lpsl -lm -o sm_nearneighbor
>> /usr/bin/install -m 0755 sm_nearneighbor /opt/shakemap/bin
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c
>> dist_rrupt.c
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c
>> vector.c
>> /usr/bin/cc dist_rrupt.o vector.o -lm -o dist_rrupt
>> /usr/bin/install -m 0755 dist_rrupt /opt/shakemap/bin
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c
>> dist_rx.c
>> /usr/bin/cc dist_rx.o -lm -o dist_rx
>> /usr/bin/install -m 0755 dist_rx /opt/shakemap/bin
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c
>> directivity.c
>> /usr/bin/cc -O -I . -I /usr/include/gmt -I /usr/include -DGMT45 -c
>> nrfuncs.c
>> /usr/bin/cc directivity.o vector.o nrfuncs.o -lm -o directivity
>> /usr/bin/install -m 0755 directivity /opt/shakemap/bin
>> make[2]: Leaving directory `/opt/shakemap/src/contour'
>> ...
>>
>> Are either of these warnings something to be concerned about? No other
>> errors or failures were reported.
>>
>>
>>
>> These don't look like the kind of errors that will cause problems, but
>> one never knows until one actually tries to run the program.
>>
>>
>> I have chosen to use the following perl modules as most of the historic
>> versions are NOT available at http://backpan.perl.org/:
>> Bundle::LWP v5.835
>> DBD::mysql v4.021
>> HTML::Template v2.91
>> XML::Parser v2.41
>> XML::Write rv0.615
>> enum v1.016
>> Time::CTime v2011.0517
>> Event v1.20
>> Mail::Sender v08.21
>> Config::General v2.50
>> XML::Simple v2.20
>> Time::y2038 v20100403
>>
>> and then there is GMT: v4.5.1-1
>>
>>
>>
>> Yes, it's difficult to keep on top of all the module updates. They
>> usually work these days since the language is fairly stable. If you run
>> into module problems, some tweaking may be necessary.
>>
>>
>>
>>
>> *Questions*
>> Just a few simple questions:
>>
>> 1. In an attempt to confirm that everything is working OK, I tried to
>> execute shake over the example data included with ShakeMap at
>> <shakemap_home>/data called "9583161".
>>
>> I entered <shakemap_home>/bin and ran:
>> ./shake -event 9583161 -verbose
>>
>> the output was:
>> shake: Running: '/opt/shakemap/bin/../bin/retrieve -event 9583161'
>> shake: Running: '/opt/shakemap/bin/../bin/pending -event 9583161'
>> transfer: Unable to access 9583161 download dir from /opt/shakemap/bin
>> shake: Done with 'pending'
>> shake: Running: '/opt/shakemap/bin/../bin/grind -event 9583161 -qtm -xml'
>> cp: cannot stat `/tmp.topo2grd.24763.grd': No such file or directory
>> grdsample: Could not find file [/tmp.topo2grd.24763.grd.1]
>> Could not find /tmp.topo2grd.24763.grd, aborting.
>> grind: Error: Error in topo/sitecorr map creation, exiting.
>> shake: Error in grind: 256
>>
>> How do I set about fixing the transfer error? I have already
>> reviewed <shakemap_home>/config/transfer.conf for mistakes.
>>
>>
>> This isn't a transfer error, it's an error in grind. Essentially, you
>> have not set up a qtm_file in grind.conf, so grind tries to look for a DEM
>> to convert to Vs30, but not finding it, it issues this rather unhelpful
>> error message. If you run grind without -qtm, it should work. Note that
>> 'mapping' will probably complain that there is no topography, as well.
>> You'll need to configure this in mapping.conf.
>>
>> If you are running ShakeMap in a fixed region, it is probably best to
>> generate fixed Vs30 and topography files, and configure them in grind.conf
>> and mapping.conf. If you are running ShakeMaps globally, it is probably
>> best to get the SRTM30 DEM, configure include/macros with the correct path,
>> leave qtm_file unconfigured in grind.conf, leave the topo files
>> unconfigured in mapping.conf, and run mapping with the -gsm option.
>>
>> The DEM and some associated tools can be had here:
>>
>>
>> ftp://ftpext.usgs.gov/pub/cr/co/golden/lin/ShakeMap%20Portable/SRTM30.tar.gz
>>
>> There is also a ShakeMap virtual machine (runs on Virtual Box) on the
>> same site, in case you run into too many installation problems.
>>
>>
>> I then tried to locate tmp.topo2grd.24763.grd and came up empty handed.
>> Perhaps this is created when transfer succeeds.
>>
>>
>> 2. I see that Earthworm's gmew outputs files to .../input/. e.g.,
>>
>> 998_dig_dat.xml
>>
>> So I will set the paths so that this information is written to
>> <shakemap_home>/data/input.
>>
>> Any other important bits?
>>
>>
>> 3. Was the added functionality in gmew enough to be a wholesale
>> replacement to shakemapfeed?
>>
>>
>>
>> I don't know anything at all about Earthworm, so someone else will have
>> to help you.
>>
>>
>> 4. Do there exists alternatives to ShakeMap with less overhead (less
>> email, less websites, etc.)? Something similar to the PSD plots calculated
>> by obspy as an alternative to configuring an entire PQLX? ShakeMap appears
>> to be a great distribution system. But I am also interested in a simple
>> tool that just outputs pngs of the ShakeMaps themselves.
>>
>>
>>
>> Not that I know of. All you really need to get the maps are grind and
>> mapping (assuming you have the input data set up). genex will convert the
>> PostScript into JPEGS and make a few other products. transfer can be
>> ignored, but you could also set it up to copy the products you want to a
>> directory of your choice. Everything else is optional. You could pretty
>> easily write a script to run grind and mapping, then convert the maps
>> you're interested in to PNG.
>>
>> Hope this helps,
>> Bruce
>>
>>
>>
>>
>>
>>
>> Thank you for your insights and comments.
>>
>>
>>
>> Kind Regards,
>>
>>
>> *Branden C. Christensen*
>> Director, OSOP
>> *branden.christensen at osop.com.pa*
>> www.osop.com.pa
>> Volcan, Panama
>>
>>
>>
>> _______________________________________________
>> Shake-dev mailing list
>> Shake-dev at geohazards.usgs.gov
>> https://geohazards.usgs.gov/mailman/listinfo/shake-dev
>>
>>
>>
>
>
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