[Shake-dev] FW: to shakedev [SEC=UNCLASSIFIED]

[Renate Hartog]

I have a vague recollection this happening to our installation as well, but
I can't find my note about it. It went away if I didn't use a specific flag
for grind. Try running it without the -xml flag and see if that works..

Renate

On Mon, Oct 31, 2011 at 10:27 AM, <Trevor.Allen at ga.gov.au> wrote:

>  Hi all,
>
> I've recently been attempting to create a new installation of V3.5 on a
> Ubuntu 11.1 server and I've been getting some errors that are completely
> foreign (to me anyway - see below).  grind seems to pull up on the pga.grd,
> but generates the other grids in the event output directory, in addition to
> a temp grid which is not removed. ****
>
> I’m using GMT4.5.5 and have tried to build both GMT and ShakeMap using
> netcdf versions 3.6.3 and 4.1.1 (as suggested in a previous forum), but
> without any success.****
>
> Does anybody know what might be going on here?  Any thoughts would be
> greatly appreciated!
>
> Thanks,
> Trev
>
>
> shake at shake-server:~/shake/bin$ sudo ./shake -event 201104051134 -verbose
> shake: Running: '/home/shake/shake/bin/../bin/grind -event 201104051134
> -qtm -xml -lonspan 4.0 -psa'
> *** buffer overflow detected ***: /usr/local/GMT4.5.5/bin/grdmath
> terminated
> ======= Backtrace: =========
> /lib/i386-linux-gnu/libc.so.6(__fortify_fail+0x45)[0x1f78d5]
> /lib/i386-linux-gnu/libc.so.6(+0xe66d7)[0x1f66d7]
> /lib/i386-linux-gnu/libc.so.6(+0xe596e)[0x1f596e]
> /usr/local/GMT4.5.5/bin/grdmath[0x8062c34]
> /usr/local/GMT4.5.5/bin/grdmath[0x805051b]
> /lib/i386-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x129113]
> /usr/local/GMT4.5.5/bin/grdmath[0x8053641]
> ======= Memory map: ========
> 00110000-00286000 r-xp 00000000 08:01 916647     /lib/i386-linux-gnu/
> libc-2.13.so
> 00286000-00288000 r--p 00176000 08:01 916647     /lib/i386-linux-gnu/
> libc-2.13.so
> 00288000-00289000 rw-p 00178000 08:01 916647     /lib/i386-linux-gnu/
> libc-2.13.so
> 00289000-0028c000 rw-p 00000000 00:00 0
> 005c4000-005e2000 r-xp 00000000 08:01 916634     /lib/i386-linux-gnu/
> ld-2.13.so
> 005e2000-005e3000 r--p 0001d000 08:01 916634     /lib/i386-linux-gnu/
> ld-2.13.so
> 005e3000-005e4000 rw-p 0001e000 08:01 916634     /lib/i386-linux-gnu/
> ld-2.13.so
> 007cf000-007d0000 r-xp 00000000 00:00 0          [vdso]
> 00994000-009bc000 r-xp 00000000 08:01 916677     /lib/i386-linux-gnu/
> libm-2.13.so
> 009bc000-009bd000 r--p 00028000 08:01 916677     /lib/i386-linux-gnu/
> libm-2.13.so
> 009bd000-009be000 rw-p 00029000 08:01 916677     /lib/i386-linux-gnu/
> libm-2.13.so
> 00a33000-00aa2000 r-xp 00000000 08:01 806646
> /usr/local/netcdf-3.6.3/lib/libnetcdf.so.4.0.0
> 00aa2000-00adf000 r--p 0006e000 08:01 806646
> /usr/local/netcdf-3.6.3/lib/libnetcdf.so.4.0.0
> 00adf000-00ae0000 rw-p 000ab000 08:01 806646
> /usr/local/netcdf-3.6.3/lib/libnetcdf.so.4.0.0
> 00ae0000-00ae1000 rw-p 00000000 00:00 0
> 00b06000-00b22000 r-xp 00000000 08:01 916668
> /lib/i386-linux-gnu/libgcc_s.so.1
> 00b22000-00b23000 r--p 0001b000 08:01 916668
> /lib/i386-linux-gnu/libgcc_s.so.1
> 00b23000-00b24000 rw-p 0001c000 08:01 916668
> /lib/i386-linux-gnu/libgcc_s.so.1
> 08048000-08123000 r-xp 00000000 08:01 812241
> /usr/local/GMT4.5.5/bin/grdmath
> 08123000-08124000 r--p 000da000 08:01 812241
> /usr/local/GMT4.5.5/bin/grdmath
> 08124000-08146000 rw-p 000db000 08:01 812241
> /usr/local/GMT4.5.5/bin/grdmath
> 08146000-08170000 rw-p 00000000 00:00 0
> 0875a000-0879c000 rw-p 00000000 00:00 0          [heap]
> b770d000-b770f000 rw-p 00000000 00:00 0
> b7720000-b7722000 rw-p 00000000 00:00 0
> bfdbb000-bfded000 rw-p 00000000 00:00 0          [stack]
> grdinfo: Could not find file
> [/home/shake/shake/bin/../data/201104051134/output/pga.grd]
> GMThd: unknown accessor 'file'
>  at /home/shake/shake/bin/../bin/grind line 2029
> shake: Error in grind: 2560
>
> shake at shake-server:~/shake/bin$ ls
> /home/shake/shake/bin/../data/201104051134/output/
> b8FyxaObZg.grd  mi.grd      pga_std.grd  pgv_std.grd  psa03_std.grd
> psa10_std.grd  psa30_std.grd
> bias.txt        mi_std.grd  pgv.grd      psa03.grd    psa10.grd
> psa30.grd      urat_pga.grd
>
> ****
>
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>
>


-- 
Renate Hartog
Research Scientist
Pacific Northwest Seismic Network
Department of Earth and Space Sciences
University of Washington
Box 351310
Seattle, WA 98195

Tel. +1-206-685-7079 (office)
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