I have a vague recollection this happening to our installation as well, but I can't find my note about it. It went away if I didn't use a specific flag for grind. Try running it without the -xml flag and see if that works..<br>
<br>Renate<br><br><div class="gmail_quote">On Mon, Oct 31, 2011 at 10:27 AM, <span dir="ltr"><<a href="mailto:Trevor.Allen@ga.gov.au">Trevor.Allen@ga.gov.au</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div bgcolor="white" link="blue" vlink="purple" lang="EN-AU">
<div>
<p class="MsoNormal" style="margin-bottom: 12pt;"><font color="black" face="Calibri" size="2"><span style="font-size: 11pt; font-family: Calibri; color: windowtext;">Hi
all,<br>
<br>
I've recently been attempting to create a new installation of V3.5 on a Ubuntu
11.1 server and I've been getting some errors that are completely foreign (to
me anyway - see below). grind seems to pull up on the pga.grd, but
generates the other grids in the event output directory, in addition to a temp
grid which is not removed. <u></u><u></u></span></font></p>
<p class="MsoNormal" style="margin-bottom: 12pt;"><font color="black" face="Calibri" size="2"><span style="font-size: 11pt; font-family: Calibri; color: windowtext;">Im
using GMT4.5.5 and have tried to build both GMT and ShakeMap using netcdf
versions 3.6.3 and 4.1.1 (as suggested in a previous forum), but without any
success.<u></u><u></u></span></font></p>
<p class="MsoNormal" style="margin-bottom: 12pt;"><font color="black" face="Calibri" size="2"><span style="font-size: 11pt; font-family: Calibri; color: windowtext;">Does
anybody know what might be going on here? Any thoughts would be greatly appreciated!<br>
<br>
Thanks,<br>
Trev<br>
</span></font><font face="Calibri" size="2"><span style="font-size: 11pt; font-family: Calibri;"><br>
</span></font><font face="Courier New" size="2"><span style="font-size: 10pt; font-family: "Courier New";"><br>
shake@shake-server:~/shake/bin$ sudo ./shake -event 201104051134 -verbose<br>
shake: Running: '/home/shake/shake/bin/../bin/grind -event 201104051134 -qtm
-xml -lonspan 4.0 -psa'<br>
*** buffer overflow detected ***: /usr/local/GMT4.5.5/bin/grdmath terminated<br>
======= Backtrace: =========<br>
/lib/i386-linux-gnu/libc.so.6(__fortify_fail+0x45)[0x1f78d5]<br>
/lib/i386-linux-gnu/libc.so.6(+0xe66d7)[0x1f66d7]<br>
/lib/i386-linux-gnu/libc.so.6(+0xe596e)[0x1f596e]<br>
/usr/local/GMT4.5.5/bin/grdmath[0x8062c34]<br>
/usr/local/GMT4.5.5/bin/grdmath[0x805051b]<br>
/lib/i386-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x129113]<br>
/usr/local/GMT4.5.5/bin/grdmath[0x8053641]<br>
======= Memory map: ========<br>
00110000-00286000 r-xp 00000000 08:01 916647
/lib/i386-linux-gnu/<a href="http://libc-2.13.so" target="_blank">libc-2.13.so</a><br>
00286000-00288000 r--p 00176000 08:01 916647
/lib/i386-linux-gnu/<a href="http://libc-2.13.so" target="_blank">libc-2.13.so</a><br>
00288000-00289000 rw-p 00178000 08:01 916647
/lib/i386-linux-gnu/<a href="http://libc-2.13.so" target="_blank">libc-2.13.so</a><br>
00289000-0028c000 rw-p 00000000 00:00 0 <br>
005c4000-005e2000 r-xp 00000000 08:01 916634
/lib/i386-linux-gnu/<a href="http://ld-2.13.so" target="_blank">ld-2.13.so</a><br>
005e2000-005e3000 r--p 0001d000 08:01 916634
/lib/i386-linux-gnu/<a href="http://ld-2.13.so" target="_blank">ld-2.13.so</a><br>
005e3000-005e4000 rw-p 0001e000 08:01 916634
/lib/i386-linux-gnu/<a href="http://ld-2.13.so" target="_blank">ld-2.13.so</a><br>
007cf000-007d0000 r-xp 00000000 00:00
0 [vdso]<br>
00994000-009bc000 r-xp 00000000 08:01 916677
/lib/i386-linux-gnu/<a href="http://libm-2.13.so" target="_blank">libm-2.13.so</a><br>
009bc000-009bd000 r--p 00028000 08:01 916677
/lib/i386-linux-gnu/<a href="http://libm-2.13.so" target="_blank">libm-2.13.so</a><br>
009bd000-009be000 rw-p 00029000 08:01 916677
/lib/i386-linux-gnu/<a href="http://libm-2.13.so" target="_blank">libm-2.13.so</a><br>
00a33000-00aa2000 r-xp 00000000 08:01 806646
/usr/local/netcdf-3.6.3/lib/libnetcdf.so.4.0.0<br>
00aa2000-00adf000 r--p 0006e000 08:01 806646
/usr/local/netcdf-3.6.3/lib/libnetcdf.so.4.0.0<br>
00adf000-00ae0000 rw-p 000ab000 08:01 806646
/usr/local/netcdf-3.6.3/lib/libnetcdf.so.4.0.0<br>
00ae0000-00ae1000 rw-p 00000000 00:00 0 <br>
00b06000-00b22000 r-xp 00000000 08:01 916668
/lib/i386-linux-gnu/libgcc_s.so.1<br>
00b22000-00b23000 r--p 0001b000 08:01 916668
/lib/i386-linux-gnu/libgcc_s.so.1<br>
00b23000-00b24000 rw-p 0001c000 08:01 916668
/lib/i386-linux-gnu/libgcc_s.so.1<br>
08048000-08123000 r-xp 00000000 08:01 812241 /usr/local/GMT4.5.5/bin/grdmath<br>
08123000-08124000 r--p 000da000 08:01 812241
/usr/local/GMT4.5.5/bin/grdmath<br>
08124000-08146000 rw-p 000db000 08:01 812241
/usr/local/GMT4.5.5/bin/grdmath<br>
08146000-08170000 rw-p 00000000 00:00 0 <br>
0875a000-0879c000 rw-p 00000000 00:00
0 [heap]<br>
b770d000-b770f000 rw-p 00000000 00:00 0 <br>
b7720000-b7722000 rw-p 00000000 00:00 0 <br>
bfdbb000-bfded000 rw-p 00000000 00:00
0 [stack]<br>
grdinfo: Could not find file
[/home/shake/shake/bin/../data/201104051134/output/pga.grd]<br>
GMThd: unknown accessor 'file'<br>
at /home/shake/shake/bin/../bin/grind line 2029<br>
shake: Error in grind: 2560</span></font><br>
<br>
<font face="Courier New" size="2"><span style="font-size: 10pt; font-family: "Courier New";">shake@shake-server:~/shake/bin$
ls /home/shake/shake/bin/../data/201104051134/output/<br>
b8FyxaObZg.grd mi.grd pga_std.grd
pgv_std.grd psa03_std.grd psa10_std.grd psa30_std.grd<br>
bias.txt mi_std.grd
pgv.grd psa03.grd
psa10.grd psa30.grd
urat_pga.grd<br>
<br>
</span></font><u></u><u></u></p>
</div>
</div>
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<br></blockquote></div><br><br clear="all"><br>-- <br>Renate Hartog<br>Research Scientist<br>Pacific Northwest Seismic Network<br>Department of Earth and Space Sciences<br>University of Washington<br>Box 351310<br>Seattle, WA 98195<br>
<br>Tel. +1-206-685-7079 (office)<br><br>