[Shake-dev] Postscript delegate failed
Petros Triantafyllidis
trian at auth.gr
Tue Mar 5 07:48:32 UTC 2013
Dear Billy,
My mistake: You have to remove "-O2" CFLAG from config.mk to recompile
GMT (instead of replacing it with "-O"). Here's the original message:
https://geohazards.usgs.gov/pipermail/shake-dev/2012-March/000404.html
by Sergio Arregui (sarregui at cicese.mx).
<mailto:shake-dev%40geohazards.usgs.gov?Subject=Re%3A%20%5BShake-dev%5D%20Errors%20with%20grind&In-Reply-To=%3C4F6B9342.2080901%40cicese.mx%3E>
Apologies for misleading you and I hope this time you'll stand lucky,
Petros
On 05/03/2013 03:24 ??, Billy edson Burgoa Rosso wrote:
> Dear Petros,
>
> Thank you for your help. I still have the "buffer overflow" problem,
> although I have recompiled GMT using -O instead of -O2 cflags. In
> addition, I recompiled shakemap because this needs gmt libraries.
>
> Any idea?
>
> Regards,
>
> Billy Edson Burgoa Rosso
> ------------------------------------------------------------------------
> *De:* Petros Triantafyllidis <trian at auth.gr>
> *Para:* Billy edson Burgoa Rosso <billyburgoa at yahoo.com>
> *CC:* shake-dev at geohazards.usgs.gov
> *Enviado:* Lunes, 4 de marzo, 2013 5:53 P.M.
> *Asunto:* Re: Re: [Shake-dev] Postscript delegate failed
>
> Hi Billy,
> Actually I have had the same problems with Ubuntu. Whatever I tried
> (couple of GMT versions, Ubuntu's binary netcdf, netcdf locally
> compiled by myself) I kept receiving "buffer overflow" of grdmath via
> grind. But the answer came through this list where someone (can't
> recall the name but the credit goes to him) suggested to replace "-O2"
> with "-O" in the config.mk file during the compilation of GMT. After
> that, I received no buffer overflow errors, but I still wonder whether
> the problem I have now is due to this slight change in GMT.
>
> Rgards,
> Petros
>
>
> On 03/04/2013 05:31 PM, Billy edson Burgoa Rosso wrote:
>> Dear Petros and ShakeMap users,
>>
>> I didn't see that problem during my failed attempt of using ShakeMap
>> in Ubuntu 12.04 (64 bits) and I am sorry for not giving you hand with
>> this issue. However, there were something that called my attention
>> when you ran grind program and I would like to ask you some questions.
>>
>> Some months ago, I compiled and installed ShakeMap in Ubuntu 12.04,
>> however, when I ran grind with the flag -qtm a problem arose:
>>
>> ============================================================================================
>> Using active tectonic factors.
>> *** buffer overflow detectarribaed ***: /usr/local/bin//grdmath
>> terminated
>> ======= Backtrace: =========
>> /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7fab547b6807]
>> /lib/x86_64-linux-gnu/libc.so.6(+0x109700)[0x7fab547b5700]
>> /lib/x86_64-linux-gnu/libc.so.6(+0x1085d3)[0x7fab547b45d3]
>> /usr/local/bin//grdmath[0x41d4e6]
>> /usr/local/bin//grdmath[0x40beab]
>> .
>> .
>> .
>> grdmath: Not a supported grid format
>> [/home/billy/shake/shake3.5/bin/../data/9583161/output/3vkJ4ZxqVL.grd]
>> grdmath: Not a supported grid format
>> [/home/billy/shake/shake3.5/bin/../data/9583161/output/Nc4i89isTz.grd]
>> grdmath: GMT SYNTAX ERROR:
>> /home/billy/shake/shake3.5/bin/../data/9583161/output/mi.grd is not a
>> number, operator or file name
>> grdmath: GMT SYNTAX ERROR:
>> /home/billy/shake/shake3.5/bin/../data/9583161/output/mi.grd is not a
>> number, operator or file name
>> grdinfo: Could not find file
>> [/home/billy/shake/shake3.5/bin/../data/9583161/output/pgv.grd]
>> GMThd: unknown accessor 'file'
>> at /home/billy/shake/shake3.5/bin/../bin/grind line 2124.
>> ===========================================================================================
>> Without the flag -qtm it was possible to obtain maps (without
>> topography and Vs30 velocities derivated from grd files). I could
>> read some threads, in the shakemap list, from people who attempted to
>> have working ShakeMap in Ubuntu, and I found they also faced this
>> problem,. Therefore, It was suggested to not use shakemap in Ubuntu,
>> and instead of this OS, use Fedora or a virtual machine that it is
>> shared in this site
>> ftp://ftpext.usgs.gov/pub/cr/co/golden/lin/ShakeMap%20Portable/. I am
>> currently using Fedora to run ShakeMap and all is working properly.
>>
>> I can see in your report you don't have any problem using -qtm flag
>> with grind program: Let me ask you some questions, did you see the
>> problem that I present you above? If yes, could you please let me
>> know what you did to solve it?
>>
>> For the ShakeMap community, Is anybody running ShakeMap in Ubuntu
>> 12.04 (64 bits) using grd files?
>>
>> Thank you in advance.
>>
>>
>> Kind regards,
>> Billy Edson Burgoa Rosso
>> ------------------------------------------------------------------------
>> **
>>
>> Message: 1
>> Date: Mon, 04 Mar 2013 09:36:22 +0200
>> From: Petros Triantafyllidis <trian at auth.gr <mailto:trian at auth.gr>>
>> To: Branden Christensen <branden.christensen at osop.com.pa
>> <mailto:branden.christensen at osop.com.pa>>
>> Cc: shake-dev at geohazards.usgs.gov <mailto:shake-dev at geohazards.usgs.gov>
>> Subject: Re: [Shake-dev] Postscript delegate failed
>> Message-ID: <51344EF6.7040104 at auth.gr <mailto:51344EF6.7040104 at auth.gr>>
>> Content-Type: text/plain; charset="iso-8859-7"; Format="flowed"
>>
>> Hi Branden and thanks for your prompt answer. Unfortunately I had no
>> luck even after your suggestion. Seems that 10.04 and 12.04 have
>> differences regarding ghostscript and its dependents.
>>
>> Regards,
>> Petros
>>
>>
>> On 03/03/2013 12:47 ??, Branden Christensen wrote:
>> > Petros:
>> >
>> >
>> > Hello from Panama.
>> >
>> > Bravo for installing SM on Ubuntu. We are starting a trend.
>> >
>> > I have not encountered this particular problem on Ubuntu. Here are the
>> > graphics packages I installed. With these packages SM works for me on
>> > 10.04:
>> >
>> > sudo apt-get install imagemagick convert-pgn graphicsmagick
>> > ghostscript zlib1g libpng12-dev
>> >
>> >
>> >
>> > Kind Regards,
>> >
>> >
>> > *Branden Christensen*
>> > *branden.christensen at osop.com.pa
>> <mailto:branden.christensen at osop.com.pa>
>> <mailto:branden.christensen at osop.com.pa
>> <mailto:branden.christensen at osop.com.pa>>*
>> > www.osop.com.pa <http://www.osop.com.pa/> <http://www.osop.com.pa/>
>> > Volcan, Panama
>> >
>> > Follow OSOP on Facebook: https://www.facebook.com/osop.panama
>> >
>> >
>> > On Sat, Mar 2, 2013 at 9:28 PM, Petros Triantafyllidis
>> <trian at auth.gr <mailto:trian at auth.gr>
>> > <mailto:trian at auth.gr <mailto:trian at auth.gr>>> wrote:
>> >
>> > Hello,
>> > I am quite new with ShakeMap and just installed it under Ubuntu
>> > 12.04 LTS along with GMT 4.5.7. While still in test period, I face
>> > problems with some of the events during plotregr, which probably
>> > point to ghostscript issue (GPL Ghostscript 9.05 (2012-02-08)). I
>> > tried both with ImageMagick/Graphicsmagick, even compiled a
>> > different version of ghostscript (9.07), but the result remains
>> > the same and pg{a,v}_regr.p{df,ng} are not produced. Although
>> > default event "9583161" runs smoothly I would appreciate any
>> > help/hint.
>> > Thanks in advance,
>> > Petros
>> >
>> >
>> > igctech at localhost:~/ShakeMap$ bin/shake -event auth2013cxej -verbose
>> > shake started at Sat Mar 2 20:49:29 2013
>> > 2013-03-02 20:49:29 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/retrieve -event auth2013cxej'
>> > 2013-03-02 20:49:30 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/pending -event auth2013cxej'
>> > 2013-03-02 20:49:31 : transfer: ----- Starting Transfer at
>> > 03/02/2013 20:49:31 -----
>> > 2013-03-02 20:49:31 : transfer: ----- Transfer finished at
>> > 03/02/2013 20:49:31 -----
>> > 2013-03-02 20:49:31 : shake: Done with 'pending'
>> > 2013-03-02 20:49:31 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/grind -event auth2013cxej -qtm
>> > -xml'
>> > 2013-03-02 20:49:36 : grind: Warning: Vs30 grid contains 6978
>> > invalid values. They will be replaced with the default Vs30 (686
>> > m/s).
>> > grind: Sanity check - bias_min_bias limited to -1.8
>> > Uncertainty computation skipped (no Intensity > 6.0)
>> > 2013-03-02 20:51:17 : shake: Done with 'grind'
>> > 2013-03-02 20:51:17 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/tag -event auth2013cxej'
>> > 2013-03-02 20:51:18 : shake: Done with 'tag'
>> > 2013-03-02 20:51:18 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/mapping -event auth2013cxej
>> > -timestamp -itopo'
>> > GMT_grd_is_global: probably, x spans exactly 360 and -90 <= y <= 90
>> > To make sure the grid is recognized as geographical and
>> > global, use the -fg option
>> > GMT_grd_is_global: probably, x spans exactly 360 and -90 <= y <= 90
>> > To make sure the grid is recognized as geographical and
>> > global, use the -fg option
>> > GMT_grd_is_global: probably, x spans exactly 360 and -90 <= y <= 90
>> > To make sure the grid is recognized as geographical and
>> > global, use the -fg option
>> > GMT_grd_is_global: probably, x spans exactly 360 and -90 <= y <= 90
>> > To make sure the grid is recognized as geographical and
>> > global, use the -fg option
>> > Printing grade - (-0.000)
>> > 2013-03-02 20:53:23 : shake: Done with 'mapping'
>> > 2013-03-02 20:53:23 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/plotregr -event auth2013cxej
>> > -lab_dev 6'
>> > 2013-03-02 20:53:24 : plotregr: ----- Starting plotregr at
>> > 03/02/2013 20:53:24 -----
>> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
>> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
>> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
>> > "-sOutputFile=/tmp/gmoEAnGg" "--" "/tmp/gmbKkWzt" "-c" "quit"
>> > (child process quit due to signal 9).
>> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
>> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
>> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
>> > "-sOutputFile=/tmp/gmoEAnGg" "--" "/tmp/gmbKkWzt" "-c" "quit"
>> > (child process quit due to signal 9).
>> > /usr/bin/gm convert: Postscript delegate failed
>> > (/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pga_regr.ps
>> > <http://pga_regr.ps <http://pga_regr.ps/>>).
>> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
>> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
>> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
>> > "-sOutputFile=/tmp/gmLOQhn8" "--" "/tmp/gmCOAFoz" "-c" "quit"
>> > (child process quit due to signal 9).
>> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
>> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
>> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
>> > "-sOutputFile=/tmp/gmLOQhn8" "--" "/tmp/gmCOAFoz" "-c" "quit"
>> > (child process quit due to signal 9).
>> > /usr/bin/gm convert: Postscript delegate failed
>> > (/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pga_regr.ps
>> > <http://pga_regr.ps <http://pga_regr.ps/>>).
>> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
>> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
>> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
>> > "-sOutputFile=/tmp/gmgtmzfh" "--" "/tmp/gmymI0Vg" "-c" "quit"
>> > (child process quit due to signal 9).
>> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
>> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
>> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
>> > "-sOutputFile=/tmp/gmgtmzfh" "--" "/tmp/gmymI0Vg" "-c" "quit"
>> > (child process quit due to signal 9).
>> > /usr/bin/gm convert: Postscript delegate failed
>> > (/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pgv_regr.ps
>> > <http://pgv_regr.ps <http://pgv_regr.ps/>>).
>> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
>> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
>> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
>> > "-sOutputFile=/tmp/gmPqQU14" "--" "/tmp/gmsOZ4H5" "-c" "quit"
>> > (child process quit due to signal 9).
>> > /usr/bin/gm convert: "gs" "-q" "-dBATCH" "-dMaxBitmap=50000000"
>> > "-dNOPAUSE" "-sDEVICE=pnmraw" "-dTextAlphaBits=4"
>> > "-dGraphicsAlphaBits=4" "-r72x72" "-g595x842"
>> > "-sOutputFile=/tmp/gmPqQU14" "--" "/tmp/gmsOZ4H5" "-c" "quit"
>> > (child process quit due to signal 9).
>> > /usr/bin/gm convert: Postscript delegate failed
>> > (/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pgv_regr.ps
>> > <http://pgv_regr.ps <http://pgv_regr.ps/>>).
>> > 2013-03-02 21:45:46 : plotregr: ----- plotregr finished at
>> > 03/02/2013 21:45:46 -----
>> > 2013-03-02 21:45:47 : shake: Done with 'plotregr'
>> > 2013-03-02 21:45:47 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/genex -event auth2013cxej -zip
>> > -metadata -shape shape'
>> > 2013-03-02 21:46:53 : shake: Done with 'genex'
>> > 2013-03-02 21:46:53 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/transfer -event auth2013cxej
>> > -www -push'
>> > 2013-03-02 21:46:57 : transfer: ----- Starting Transfer at
>> > 03/02/2013 21:46:57 -----
>> > 2013-03-02 21:46:59 : transfer: ----- Transfer finished at
>> > 03/02/2013 21:46:59 -----
>> > 2013-03-02 21:46:59 : shake: Done with 'transfer'
>> > 2013-03-02 21:46:59 : shake: Running:
>> > '/home/igctech/ShakeMap/bin/../bin/setversion -event auth2013cxej'
>> > 2013-03-02 21:47:00 : shake: Done with 'setversion'
>> >
>> > --
>> > Dr. TRIANTAFYLLIDIS PETROS E-MAIL:trian at auth.gr
>> <mailto:trian at auth.gr> <mailto:trian at auth.gr <mailto:trian at auth.gr>>
>> > ^^^^^^^^^^^^^^^^^^^^^^^^^^http://users.auth.gr/trian
>> > Aristotle University - Computer Science Department, POBox 114,
>> > 54124 Thessaloniki-GREECE - TEL:+30-2310998585
>> <tel:%2B30-2310998585>, FAX:2310998419
>> >
>> >
>> > _______________________________________________
>> > Shake-dev mailing list
>> > Shake-dev at geohazards.usgs.gov
>> <mailto:Shake-dev at geohazards.usgs.gov>
>> <mailto:Shake-dev at geohazards.usgs.gov
>> <mailto:Shake-dev at geohazards.usgs.gov>>
>> > https://geohazards.usgs.gov/mailman/listinfo/shake-dev
>> >
>> >
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