[Shake-dev] Postscript delegate failed
Billy edson Burgoa Rosso
billyburgoa at yahoo.com
Tue Mar 5 12:10:46 UTC 2013
Dear Petros,
Great! ShakeMap is working properly in Ubuntu 12.04 :)
I've tested with the $SHAKE_HOME/data/9583161 event as well as another large earthquake and all looks fine. I can't see any complain from shakemap programs. I am sorry for not helping you. However, I am not using plotregr program. These are the programs I am running:
billy at ubuntu:~/shake/shake3.5/bin$ ./shake -event 9583161 -dryrun
/home/billy/shake/shake3.5/bin/../bin/retrieve -event 9583161
/home/billy/shake/shake3.5/bin/../bin/pending -event 9583161
/home/billy/shake/shake3.5/bin/../bin/grind -event 9583161 -qtm -xml
/home/billy/shake/shake3.5/bin/../bin/tag -event 9583161
/home/billy/shake/shake3.5/bin/../bin/mapping -event 9583161 -timestamp -itopo -verbose
/home/billy/shake/shake3.5/bin/../bin/genex -event 9583161 -zip -metadata -shape shape
/home/billy/shake/shake3.5/bin/../bin/transfer -event 9583161 -www -push
/home/billy/shake/shake3.5/bin/../bin/setversion -event 9583161
/home/billy/shake/shake3.5/bin/../bin/shakemail -event 9583161
Thanks again to you and Sergio Arregui for that great trick.
Kind regards,
Billy Edson Burgoa Rosso
________________________________
De: Petros Triantafyllidis <trian at auth.gr>
Para: Billy edson Burgoa Rosso <billyburgoa at yahoo.com>
CC: shake-dev at geohazards.usgs.gov
Enviado: Martes, 5 de marzo, 2013 7:48 A.M.
Asunto: Re: [Shake-dev] Postscript delegate failed
Dear Billy,
My mistake: You have to remove "-O2" CFLAG from config.mk to
recompile GMT (instead of replacing it with "-O"). Here's the
original message: https://geohazards.usgs.gov/pipermail/shake-dev/2012-March/000404.html by Sergio Arregui (sarregui at cicese.mx).
Apologies for misleading you and I hope this time you'll stand lucky,
Petros
On 05/03/2013 03:24 πμ, Billy edson Burgoa Rosso wrote:
Dear Petros,
>
>Thank you for your help. I still have the "buffer overflow"
problem, although I have recompiled GMT using -O instead of -O2
cflags. In addition, I recompiled shakemap because this needs
gmt libraries.
>
>Any idea?
>
>Regards,
>
>
>
>
>Billy Edson Burgoa Rosso
>
>
>________________________________
> De: Petros Triantafyllidis <trian at auth.gr>
>Para: Billy edson Burgoa Rosso <billyburgoa at yahoo.com>
>CC: shake-dev at geohazards.usgs.gov
>Enviado: Lunes, 4 de marzo, 2013 5:53 P.M.
>Asunto: Re: Re: [Shake-dev] Postscript delegate failed
>
>
>Hi Billy,
> Actually I have had the same problems with Ubuntu.
Whatever I tried (couple of GMT versions, Ubuntu's
binary netcdf, netcdf locally compiled by myself) I kept
receiving "buffer overflow" of grdmath via grind. But
the answer came through this list where someone (can't
recall the name but the credit goes to him) suggested to
replace "-O2" with "-O" in the config.mk file during the
compilation of GMT. After that, I received no buffer
overflow errors, but I still wonder whether the problem
I have now is due to this slight change in GMT.
>
>Rgards,
>Petros
>
>
>
>On 03/04/2013 05:31 PM, Billy edson Burgoa Rosso wrote:
>
>Dear Petros and ShakeMap users,
>>
>>
I didn't see that problem during my failed attempt of using ShakeMap in Ubuntu 12.04 (64 bits) and I am sorry for not giving you hand with this issue. However, there were something that called my attention when you ran grind program and I would like to ask you some questions.
>>
>>Some months ago, I compiled and installed ShakeMap
in Ubuntu 12.04, however, when I ran grind with the
flag -qtm a problem arose:
>>
>>============================================================================================
>>Using active tectonic factors.
>>*** buffer overflow detectarribaed ***:
/usr/local/bin//grdmath terminated
>>======= Backtrace: =========
>>/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7fab547b6807]
>>/lib/x86_64-linux-gnu/libc.so.6(+0x109700)[0x7fab547b5700]
>>/lib/x86_64-linux-gnu/libc.so.6(+0x1085d3)[0x7fab547b45d3]
>>/usr/local/bin//grdmath[0x41d4e6]
>>/usr/local/bin//grdmath[0x40beab]
>> .
>> .
>> .
>>grdmath: Not a supported grid format
[/home/billy/shake/shake3.5/bin/../data/9583161/output/3vkJ4ZxqVL.grd]
>>grdmath: Not a supported grid format
[/home/billy/shake/shake3.5/bin/../data/9583161/output/Nc4i89isTz.grd]
>>grdmath: GMT SYNTAX ERROR:
/home/billy/shake/shake3.5/bin/../data/9583161/output/mi.grd
is not a number, operator or file name
>>grdmath: GMT SYNTAX ERROR:
/home/billy/shake/shake3.5/bin/../data/9583161/output/mi.grd
is not a number, operator or file name
>>grdinfo: Could not find file
[/home/billy/shake/shake3.5/bin/../data/9583161/output/pgv.grd]
>>GMThd: unknown accessor 'file'
>> at /home/billy/shake/shake3.5/bin/../bin/grind line
2124.
>>===========================================================================================
>>Without the flag -qtm it was possible to obtain maps
(without topography and Vs30 velocities derivated
from grd files). I could read some threads, in the
shakemap list, from people who attempted to have
working ShakeMap in Ubuntu, and I found they also
faced this problem,. Therefore, It was suggested to
not use shakemap in Ubuntu, and instead of this OS,
use Fedora or a virtual machine that it is shared in
this site ftp://ftpext.usgs.gov/pub/cr/co/golden/lin/ShakeMap%20Portable/. I am currently using Fedora to run ShakeMap and all is working properly.
>>
>>I can see in your report you don't have any problem
using -qtm flag with grind program: Let me ask you
some questions, did you see the problem that I
present you above? If yes, could you please let me
know what you did to solve it?
>>
>>For the ShakeMap community, Is anybody running
ShakeMap in Ubuntu 12.04 (64 bits) using grd files?
>>
>>Thank you in advance.
>>
>>
>>Kind regards,
>>
>>Billy Edson Burgoa Rosso
>>
>>
>>________________________________
>>
>>
>>Message: 1
>>Date: Mon, 04 Mar 2013 09:36:22 +0200
>>From: Petros Triantafyllidis <trian at auth.gr>
>>To: Branden Christensen <branden.christensen at osop.com.pa>
>>Cc: shake-dev at geohazards.usgs.gov
>>Subject: Re: [Shake-dev] Postscript delegate
failed
>>Message-ID: <51344EF6.7040104 at auth.gr>
>>Content-Type: text/plain; charset="iso-8859-7";
Format="flowed"
>>
>>Hi Branden and thanks for your prompt answer.
Unfortunately I had no
>>luck even after your suggestion. Seems that
10.04 and 12.04 have
>>differences regarding ghostscript and its
dependents.
>>
>>Regards,
>>Petros
>>
>>
>>On 03/03/2013 12:47 ??, Branden Christensen
wrote:
>>> Petros:
>>>
>>>
>>> Hello from Panama.
>>>
>>> Bravo for installing SM on Ubuntu. We are
starting a trend.
>>>
>>> I have not encountered this particular
problem on Ubuntu. Here are the
>>> graphics packages I installed. With these
packages SM works for me on
>>> 10.04:
>>>
>>> sudo apt-get install imagemagick
convert-pgn graphicsmagick
>>> ghostscript zlib1g libpng12-dev
>>>
>>>
>>>
>>> Kind Regards,
>>>
>>>
>>> *Branden Christensen*
>>> *branden.christensen at osop.com.pa <mailto:branden.christensen at osop.com.pa>*
>>> www.osop.com.pa <http://www.osop.com.pa/>
>>> Volcan, Panama
>>>
>>> Follow OSOP on Facebook: https://www.facebook.com/osop.panama
>>>
>>>
>>> On Sat, Mar 2, 2013 at 9:28 PM, Petros
Triantafyllidis <trian at auth.gr
>>> <mailto:trian at auth.gr>> wrote:
>>>
>>> Hello,
>>> I am quite new with ShakeMap and just
installed it under Ubuntu
>>> 12.04 LTS along with GMT 4.5.7. While
still in test period, I face
>>> problems with some of the events during
plotregr, which probably
>>> point to ghostscript issue (GPL
Ghostscript 9.05 (2012-02-08)). I
>>> tried both with
ImageMagick/Graphicsmagick, even compiled a
>>> different version of ghostscript (9.07),
but the result remains
>>> the same and pg{a,v}_regr.p{df,ng} are
not produced. Although
>>> default event "9583161" runs smoothly I
would appreciate any
>>> help/hint.
>>> Thanks in advance,
>>> Petros
>>>
>>>
>>> igctech at localhost:~/ShakeMap$ bin/shake
-event auth2013cxej -verbose
>>> shake started at Sat Mar 2 20:49:29
2013
>>> 2013-03-02 20:49:29 : shake: Running:
>>>
'/home/igctech/ShakeMap/bin/../bin/retrieve
-event auth2013cxej'
>>> 2013-03-02 20:49:30 : shake: Running:
>>>
'/home/igctech/ShakeMap/bin/../bin/pending
-event auth2013cxej'
>>> 2013-03-02 20:49:31 : transfer: -----
Starting Transfer at
>>> 03/02/2013 20:49:31 -----
>>> 2013-03-02 20:49:31 : transfer: -----
Transfer finished at
>>> 03/02/2013 20:49:31 -----
>>> 2013-03-02 20:49:31 : shake: Done with
'pending'
>>> 2013-03-02 20:49:31 : shake: Running:
>>> '/home/igctech/ShakeMap/bin/../bin/grind
-event auth2013cxej -qtm
>>> -xml'
>>> 2013-03-02 20:49:36 : grind: Warning:
Vs30 grid contains 6978
>>> invalid values. They will be replaced
with the default Vs30 (686
>>> m/s).
>>> grind: Sanity check - bias_min_bias
limited to -1.8
>>> Uncertainty computation skipped (no
Intensity > 6.0)
>>> 2013-03-02 20:51:17 : shake: Done with
'grind'
>>> 2013-03-02 20:51:17 : shake: Running:
>>> '/home/igctech/ShakeMap/bin/../bin/tag
-event auth2013cxej'
>>> 2013-03-02 20:51:18 : shake: Done with
'tag'
>>> 2013-03-02 20:51:18 : shake: Running:
>>>
'/home/igctech/ShakeMap/bin/../bin/mapping
-event auth2013cxej
>>> -timestamp -itopo'
>>> GMT_grd_is_global: probably, x spans
exactly 360 and -90 <= y <= 90
>>> To make sure the grid is
recognized as geographical and
>>> global, use the -fg option
>>> GMT_grd_is_global: probably, x spans
exactly 360 and -90 <= y <= 90
>>> To make sure the grid is
recognized as geographical and
>>> global, use the -fg option
>>> GMT_grd_is_global: probably, x spans
exactly 360 and -90 <= y <= 90
>>> To make sure the grid is
recognized as geographical and
>>> global, use the -fg option
>>> GMT_grd_is_global: probably, x spans
exactly 360 and -90 <= y <= 90
>>> To make sure the grid is
recognized as geographical and
>>> global, use the -fg option
>>> Printing grade - (-0.000)
>>> 2013-03-02 20:53:23 : shake: Done with
'mapping'
>>> 2013-03-02 20:53:23 : shake: Running:
>>>
'/home/igctech/ShakeMap/bin/../bin/plotregr
-event auth2013cxej
>>> -lab_dev 6'
>>> 2013-03-02 20:53:24 : plotregr: -----
Starting plotregr at
>>> 03/02/2013 20:53:24 -----
>>> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"
>>> "-dNOPAUSE" "-sDEVICE=pnmraw"
"-dTextAlphaBits=4"
>>> "-dGraphicsAlphaBits=4" "-r72x72"
"-g595x842"
>>> "-sOutputFile=/tmp/gmoEAnGg" "--"
"/tmp/gmbKkWzt" "-c" "quit"
>>> (child process quit due to signal 9).
>>> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"
>>> "-dNOPAUSE" "-sDEVICE=pnmraw"
"-dTextAlphaBits=4"
>>> "-dGraphicsAlphaBits=4" "-r72x72"
"-g595x842"
>>> "-sOutputFile=/tmp/gmoEAnGg" "--"
"/tmp/gmbKkWzt" "-c" "quit"
>>> (child process quit due to signal 9).
>>> /usr/bin/gm convert: Postscript delegate
failed
>>>
(/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pga_regr.ps
>>> <http://pga_regr.ps>).
>>> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"
>>> "-dNOPAUSE" "-sDEVICE=pnmraw"
"-dTextAlphaBits=4"
>>> "-dGraphicsAlphaBits=4" "-r72x72"
"-g595x842"
>>> "-sOutputFile=/tmp/gmLOQhn8" "--"
"/tmp/gmCOAFoz" "-c" "quit"
>>> (child process quit due to signal 9).
>>> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"
>>> "-dNOPAUSE" "-sDEVICE=pnmraw"
"-dTextAlphaBits=4"
>>> "-dGraphicsAlphaBits=4" "-r72x72"
"-g595x842"
>>> "-sOutputFile=/tmp/gmLOQhn8" "--"
"/tmp/gmCOAFoz" "-c" "quit"
>>> (child process quit due to signal 9).
>>> /usr/bin/gm convert: Postscript delegate
failed
>>>
(/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pga_regr.ps
>>> <http://pga_regr.ps>).
>>> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"
>>> "-dNOPAUSE" "-sDEVICE=pnmraw"
"-dTextAlphaBits=4"
>>> "-dGraphicsAlphaBits=4" "-r72x72"
"-g595x842"
>>> "-sOutputFile=/tmp/gmgtmzfh" "--"
"/tmp/gmymI0Vg" "-c" "quit"
>>> (child process quit due to signal 9).
>>> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"
>>> "-dNOPAUSE" "-sDEVICE=pnmraw"
"-dTextAlphaBits=4"
>>> "-dGraphicsAlphaBits=4" "-r72x72"
"-g595x842"
>>> "-sOutputFile=/tmp/gmgtmzfh" "--"
"/tmp/gmymI0Vg" "-c" "quit"
>>> (child process quit due to signal 9).
>>> /usr/bin/gm convert: Postscript delegate
failed
>>>
(/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pgv_regr.ps
>>> <http://pgv_regr.ps>).
>>> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"
>>> "-dNOPAUSE" "-sDEVICE=pnmraw"
"-dTextAlphaBits=4"
>>> "-dGraphicsAlphaBits=4" "-r72x72"
"-g595x842"
>>> "-sOutputFile=/tmp/gmPqQU14" "--"
"/tmp/gmsOZ4H5" "-c" "quit"
>>> (child process quit due to signal 9).
>>> /usr/bin/gm convert: "gs" "-q" "-dBATCH"
"-dMaxBitmap=50000000"
>>> "-dNOPAUSE" "-sDEVICE=pnmraw"
"-dTextAlphaBits=4"
>>> "-dGraphicsAlphaBits=4" "-r72x72"
"-g595x842"
>>> "-sOutputFile=/tmp/gmPqQU14" "--"
"/tmp/gmsOZ4H5" "-c" "quit"
>>> (child process quit due to signal 9).
>>> /usr/bin/gm convert: Postscript delegate
failed
>>>
(/home/igctech/ShakeMap/bin/../data/auth2013cxej/regression/pgv_regr.ps
>>> <http://pgv_regr.ps>).
>>> 2013-03-02 21:45:46 : plotregr: -----
plotregr finished at
>>> 03/02/2013 21:45:46 -----
>>> 2013-03-02 21:45:47 : shake: Done with
'plotregr'
>>> 2013-03-02 21:45:47 : shake: Running:
>>> '/home/igctech/ShakeMap/bin/../bin/genex
-event auth2013cxej -zip
>>> -metadata -shape shape'
>>> 2013-03-02 21:46:53 : shake: Done with
'genex'
>>> 2013-03-02 21:46:53 : shake: Running:
>>>
'/home/igctech/ShakeMap/bin/../bin/transfer
-event auth2013cxej
>>> -www -push'
>>> 2013-03-02 21:46:57 : transfer: -----
Starting Transfer at
>>> 03/02/2013 21:46:57 -----
>>> 2013-03-02 21:46:59 : transfer: -----
Transfer finished at
>>> 03/02/2013 21:46:59 -----
>>> 2013-03-02 21:46:59 : shake: Done with
'transfer'
>>> 2013-03-02 21:46:59 : shake: Running:
>>>
'/home/igctech/ShakeMap/bin/../bin/setversion
-event auth2013cxej'
>>> 2013-03-02 21:47:00 : shake: Done with
'setversion'
>>>
>>> --
>>> Dr. TRIANTAFYLLIDIS PETROS
E-MAIL:trian at auth.gr <mailto:trian at auth.gr>
>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^http://users.auth.gr/trian
>>> Aristotle University - Computer Science
Department, POBox 114,
>>> 54124 Thessaloniki-GREECE -
TEL:+30-2310998585
<tel:%2B30-2310998585>, FAX:2310998419
>>>
>>>
>>>
_______________________________________________
>>> Shake-dev mailing list
>>> Shake-dev at geohazards.usgs.gov <mailto:Shake-dev at geohazards.usgs.gov>
>>> https://geohazards.usgs.gov/mailman/listinfo/shake-dev
>>>
>>>
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