[Shake-dev] ShakeMap installation and user inquiries
Branden Christensen
branden.christensen at osop.com.pa
Fri Jul 13 18:40:19 UTC 2012
Bruce:
I changed the path in /opt/shakemap/install/macros to:
DEMDIR = /opt/shakemap/dem/SRTM30
The contents of my are exactly the same as yours:
osop at sandbox1:/opt/shakemap$ ls /opt/shakemap/dem/SRTM30
DATA Utah_srtm.jpg dem2grd.pl.orig foo.jpg grab_srtm30.pl topo.cpt
SRTM30 dem2grd.pl foo.grd foo.ps map.pl
osop at sandbox1:/opt/shakemap$ ls /opt/shakemap/dem/SRTM30/DATA
e020n40.grd e060s10.grd e140n90.grd w060n40.grd w100s10.grd w180n90.grd
e020n90.grd e100n40.grd e140s10.grd w060n90.grd w140n40.grd w180s10.grd
e020s10.grd e100n90.grd w020n40.grd w060s10.grd w140n90.grd
e060n40.grd e100s10.grd w020n90.grd w100n40.grd w140s10.grd
e060n90.grd e140n40.grd w020s10.grd w100n90.grd w180n40.grd
I then did a "sudo make veryclean" and "sudo make all" just in case it
mattered.
The output is still:
*osop at sandbox1:/opt/shakemap/bin$ ./grind -event 9583161 -xml -qtm -verbose*
Map bound: -120.150000/-117.650000/33.533000/35.593000
cp: cannot stat `/opt/shakemap/dem//tmp.topo2grd.28555.grd': No such file
or directory
grdsample: Could not find file [/opt/shakemap/dem//tmp.topo2grd.28555.grd.1]
Could not find /opt/shakemap/dem//tmp.topo2grd.28555.grd, aborting.
grind: Error: Error in topo/sitecorr map creation, exiting.
B
*Branden C. Christensen*
Director, OSOP
*branden.christensen at osop.com.pa*
www.osop.com.pa
Volcan, Panama
On Fri, Jul 13, 2012 at 6:16 PM, Bruce Worden <cbworden at gmail.com> wrote:
> Hi Branden,
>
> Congratulations -- it looks like you're almost there.
>
> I believe the error messages are related. When you run mapping with -gsm,
> it expects to find a topo file left behind by grind. But you were running
> without -qtm, so the topo file never got made. When you run grind with
> -qtm, it's not finding the DEM for some reason.
>
> Here is how my system is set up: In <shake>/include/macros, I have the
> following line:
>
> DEMDIR = /Users/bruceworden/Unix/ShakeMap/DATA/SRTM30
>
> In that directory is another directory called DATA
> (i.e., /Users/bruceworden/Unix/ShakeMap/DATA/SRTM30/DATA) that contains the
> following files:
>
> [giles:DATA] <281> ls
> e020n40.grd e060s10.grd e140n90.grd w060n40.grd w100s10.grd
> w180n90.grd
> e020n90.grd e100n40.grd e140s10.grd w060n90.grd w140n40.grd
> w180s10.grd
> e020s10.grd e100n90.grd w020n40.grd w060s10.grd w140n90.grd
> e060n40.grd e100s10.grd w020n90.grd w100n40.grd w140s10.grd
> e060n90.grd e140n40.grd w020s10.grd w100n90.grd w180n40.grd
>
> See if you have an analogous setup on your machine. Note that the DEM
> files are GMT grd files. If you have the raw DEM files, you'll need to use
> the program dem2grd.pl (which should be included with the directory you
> got from Kuo-Wan's FTP site) to convert them.
>
> Bruce
>
>
> On Jul 13, 2012, at 9:43 AM, Branden Christensen wrote:
>
> Bruce et al.:
>
>
> Great news. I have what looks like an operational ShakeMap installed on
> Ubuntu 10.04.
>
> It turns out the error I reported in my last email:
>
> pscoast: full resolution shoreline data base not installed
>
> was due to a version problem. I had coastline files version 2.0.2 and
> v2.0.2 files are not backwards compatible with GMT v4.5.1-1. I needed to
> use version 2.0.1. If anyone runs into this issue in the future here are
> the resources that led me to the solution:
>
> -
> https://groups.google.com/forum/?fromgroups#!topic/linux.debian.bugs.dist/Av7HBia3sbc
> - ftp://ftp.iris.washington.edu/pub/gmt/
>
>
> What follows is the output I am now getting for ShakeMap. A jpeg for the
> test event is attached.
>
> I am concerned about the following error:
>
> Could not find /opt/shakemap/dem//tmp.topo2grd.27124.grd, aborting.
>
> Please see below for the details:
>
>
> *WITHOUT -qtm flag for grind...*
> *
> *
> *
> *
> *osop at sandbox1:/opt/shakemap/bin$ ./shake -event 9583161 -dryrun*
> /opt/shakemap/bin/../bin/retrieve -event 9583161
> /opt/shakemap/bin/../bin/grind -event 9583161 -xml
> /opt/shakemap/bin/../bin/tag -event 9583161
> /opt/shakemap/bin/../bin/mapping -event 9583161 -gsm -timestamp -itopo
> /opt/shakemap/bin/../bin/genex -event 9583161 -zip -metadata -shape shape
> /opt/shakemap/bin/../bin/transfer -event 9583161 -www -push
> /opt/shakemap/bin/../bin/setversion -event 9583161
>
>
> *osop at sandbox1:/opt/shakemap/bin$ ./retrieve -event 9583161 -verbose*
>
>
> *osop at sandbox1:/opt/shakemap/bin$ ./grind -event 9583161 -xml -verbose*
> Map bound: -120.150000/-117.650000/33.533000/35.593000
> Using GMICE::WGRW11 for PGM2MI function
> Using GMICE::WGRW11 for Inverse PGM2MI function
> Using GMPE::BA08 for GMPE
> BA08: No source mechanism specified. Using default.
> grind: Bias 0.43 0.47
> grind: 16 amps flagged out this iteration
> grind: Bias 0.43 0.51
> grind: 1 amps flagged out this iteration
> grind: Bias 0.43 0.51
> grind: 0 amps flagged out this iteration
> Using DefaultIPE for IPE
> Using GMPE::BA08 for GMPE
> BA08: No source mechanism specified. Using default.
> Intensity Bias=0.57
> 0 amps flagged out this iteration
> Uncertainty computation skipped (no Intensity > 6.0)
>
>
> *osop at sandbox1:/opt/shakemap/bin$ ./tag -event 9583161 -verbose*
> tag: exiting without action
>
>
> *osop at sandbox1:/opt/shakemap/bin$ ./mapping -event 9583161 -gsm
> -timestamp -itopo -verbose*
> Running: /opt/shakemap/bin/../bin/echo -117.650000 35.593000 |
> /usr/lib/gmt/bin/mapproject
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> Running: /opt/shakemap/bin/../bin/echo -117.650000 35.593000 |
> /usr/lib/gmt/bin/mapproject
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
> Running: /opt/shakemap/bin/../bin/echo -117.650000 35.593000 |
> /usr/lib/gmt/bin/mapproject
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JQ0/16.51
> Running: /usr/lib/gmt/bin/psbasemap -Bw -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> -X2.54 -Y2.54 -K
> Running: /usr/lib/gmt/bin/psbasemap -Bw -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> -X2.54 -Y6.35 -K
> Running: /usr/lib/gmt/bin/psxy
> /opt/shakemap/bin/../lib/mapping/ca_roads.xy -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -m
> -W6/153/153/153 -O -K
> Running: /usr/lib/gmt/bin/pscoast -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> -N1/5 -N2/5 -Df -W5 -S120/160/220 -Ia/2/120/160/220 -O -K
> Running: /opt/shakemap/bin/../bin/echo -118.900000 34.563000 |
> /usr/lib/gmt/bin/psxy -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> -Sa0.762 -W6/255/0/0 -L -O -K
> Running: /opt/shakemap/bin/../bin/echo "0 -1.143 9 0 1 5 Map Version 1
> Processed Fri Jul 13, 2012 10:29:52 AM EST " | /usr/lib/gmt/bin/pstext
> -JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
> Running: /usr/lib/gmt/bin/psbasemap -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> -Ba60mf30m/a30mf30mWSen -Lfx2.54/1.78/34.5630/50+l -O
> mapping: Creating topography files.
>
> Could not find /opt/shakemap/dem//tmp.topo2grd.27124.grd, aborting.
> mapping: Topography file created.
>
> mapping: WARNING: no topography data found; will continue without topo.
> Sampling to a finer grid; old: 0.025000/0.025122 new: 30c/30c
> Running: /usr/lib/gmt/bin/grdsample
> /opt/shakemap/bin/../data/9583161/output/mi.grd
> -G/opt/shakemap/bin/../data/9583161/mapping/tmp_mi.grd -I30c/30c
> mapping: WARNING: can't find topo data: making mi without topography
> Running: /usr/lib/gmt/bin/grdimage
> /opt/shakemap/bin/../data/9583161/mapping/tmp_mi.grd -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000/10/3000
> -JM16.51 -C/opt/shakemap/bin/../lib/mapping/Ii.cpt -O -K
> mapping: WARNING: can't find topo data: making mi without topography
> Running: /usr/lib/gmt/bin/grdimage
> /opt/shakemap/bin/../data/9583161/mapping/tmp_mi.grd -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000/10/3000
> -JM25.4 -C/opt/shakemap/bin/../lib/mapping/Ii_ntsc.cpt -O -K
> Running: /usr/lib/gmt/bin/grdcontour
> /opt/shakemap/bin/../data/9583161/output/pga.grd -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> -C0.9 -W5/255/255/255 -Af12/255/255/255 -Q8 -m -L0.45/9999 -O -K
> Running: /usr/lib/gmt/bin/grdcontour
> /opt/shakemap/bin/../data/9583161/output/pgv.grd -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> -C0.2 -W5/255/255/255 -Af12/255/255/255 -Q8 -m -L0.1/9999 -O -K
> Running: /usr/lib/gmt/bin/grdimage
> /opt/shakemap/bin/../data/9583161/output/urat_pga.grd -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51
> -C/opt/shakemap/bin/../lib/mapping/sd.cpt -O -K
> Running: /usr/lib/gmt/bin/psscale
> -C/opt/shakemap/bin/../lib/mapping/sd.cpt.legend.no1
> -D6.7i/2.75i/5.00i/0.2i -O -K
> Running: /usr/lib/gmt/bin/psscale -Bp
> -C/opt/shakemap/bin/../lib/mapping/sd.cpt.legend -D6.7i/2.75i/5.00i/0.2i -O
> -K
> Running: /usr/lib/gmt/bin/psscale
> -C/opt/shakemap/bin/../lib/mapping/sd.cpt.legend.0 -D6.7i/0.1i/0.2i/0.2i -O
> -K
> Running: echo 17.145 12.446 12 0 1 5 F | /usr/lib/gmt/bin/pstext
> -JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
> Running: echo 17.145 1.524 12 0 1 5 A | /usr/lib/gmt/bin/pstext
> -JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
> Running: echo 17.145 8.636 12 0 1 5 D | /usr/lib/gmt/bin/pstext
> -JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
> Running: echo 17.145 4.318 12 0 1 5 C | /usr/lib/gmt/bin/pstext
> -JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
> Running: echo 17.145 2.845 12 0 1 5 B | /usr/lib/gmt/bin/pstext
> -JX16.4465450265/16.51 -R0/16.4465450265/0/16.51 -N -O -K
> Running: /usr/lib/gmt/bin/mapproject -JM16.51
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000
> Running: /usr/lib/gmt/bin/psxy -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
> -W1 -L -O -K
> Done plotting stations.Running: /usr/lib/gmt/bin/psxy -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
> -G255/255/0 -O -K
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> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
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> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
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> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
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> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM16.51 -S
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> Running: /opt/shakemap/bin/../bin/echo -118.900000 34.563000 |
> /usr/lib/gmt/bin/mapproject -JM16.51
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000
> mapping: WARNING: couldn't find topo and intensity data; will continue
> without topo.
> Making urat_pga plot
> Printing grade - (-0.000)
> Running: echo '0.508 0.635 12 0 1 5 GRADE: - (Mean sigma: -)' |
> /usr/lib/gmt/bin/pstext -JX19.05/16.4465450265 -R0/19.05/0/16.4465450265
> -C.05i -W255o4/0 -N -O -K
> Running: echo '13.53 0.508 12 0 1 5 MI = 6.0' | /usr/lib/gmt/bin/pstext
> -JX19.05/16.4465450265 -R0/19.05/0/16.4465450265 -N -O -K
> Making pgv plot
> Making pga plot
> Making mi plot
> Done with mi plot
> Making tvmap
> Running: /usr/lib/gmt/bin/psbasemap -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
> -Bwesn -X2.54 -Y2.54 -K
> Running: /usr/lib/gmt/bin/psxy
> /opt/shakemap/bin/../lib/mapping/ca_roads.xy -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4 -m
> -W8/153/153/153 -O -K
> Running: /usr/lib/gmt/bin/pscoast -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
> -Na/10/102/102/102 -Df -W10/102/102/102 -S120/160/220 -O -K
> Running: /opt/shakemap/bin/../bin/echo -118.900000 34.563000 |
> /usr/lib/gmt/bin/psxy -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
> -Sa0.762 -W6/255/0/0 -L -O -K
> Running: /usr/lib/gmt/bin/psbasemap -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
> -Bwesn -Lfx5.54/2.54/34.5630/50m+l -O
> Running: /usr/lib/gmt/bin/psbasemap -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JM25.4
> -Ba60mf30m/a30mf30mWSen -O
> Done with tvmap
> Running: /usr/lib/gmt/bin/grdimage
> /opt/shakemap/bin/../data/9583161/mapping/tmp_mi.grd -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JQ0/16.51
> -C/opt/shakemap/bin/../lib/mapping/Ii_ntsc.cpt -K
> Running: /usr/lib/gmt/bin/pscoast -Df -P
> -R-120.1500000000/-117.6500000000/33.5330000000/35.5930000000 -JQ0/16.51
> -S0 -O
>
>
> *osop at sandbox1:/opt/shakemap/bin$ ./genex -event 9583161 -zip -metadata
> -shape shape -verbose*
> Creating 'genex' directory
> Creating shape files
> genex: /opt/shakemap/bin/../bin/contour -g pga.grd -C 0.04 -f 0.02 -Z 0.01
> -T 4 -o shape_shape/pga >> /opt/shakemap/bin/../logs/shape.log 2>&1
> genex: /opt/shakemap/bin/../bin/contour -g psa03.grd -C 0.04 -f 0.02 -Z
> 0.01 -T 4 -o shape_shape/psa03 >> /opt/shakemap/bin/../logs/shape.log 2>&1
> genex: /opt/shakemap/bin/../bin/contour -g psa10.grd -C 0.04 -f 0.02 -Z
> 0.01 -T 4 -o shape_shape/psa10 >> /opt/shakemap/bin/../logs/shape.log 2>&1
> genex: /opt/shakemap/bin/../bin/contour -g psa30.grd -C 0.04 -f 0.02 -Z
> 0.01 -T 4 -o shape_shape/psa30 >> /opt/shakemap/bin/../logs/shape.log 2>&1
> genex: /opt/shakemap/bin/../bin/contour -g pgv.grd -C 2.0 -f 1.0 -Z 1.0 -T
> 4 -o shape_shape/pgv >> /opt/shakemap/bin/../logs/shape.log 2>&1
> genex: /opt/shakemap/bin/../bin/contour -g mi.grd -C 0.2 -f 0.1 -Z 1.0 -T
> 4 -o shape_shape/mi >> /opt/shakemap/bin/../logs/shape.log 2>&1
> Done.
> Fill data array
> Done.
> Updating the web database with the new event info
> Creating 'genex/ftp/9583161' directory
> Making JPEG's from PostScript files
> genex: Running: PATH=$PATH:/usr/bin/; export PATH; /usr/bin/convert
> -colorspace RGB -quality 85 -density 144x144 tvmap.ps tvmap.jpg;
> /usr/bin/convert -resize 50% -crop 864x861+0+-69 +antialias tvmap.jpg
> tvmap.jpg;
>
> genex: Running: PATH=$PATH:/usr/bin/; export PATH; /usr/bin/convert
> -colorspace RGB -quality 85 -density 144x144 urat_pga.ps urat_pga.jpg;
> /usr/bin/convert -resize 50% -crop +0+182 +antialias urat_pga.jpg
> urat_pga.jpg;
>
> genex: Running: PATH=$PATH:/usr/bin/; export PATH; /usr/bin/convert
> -colorspace RGB -quality 85 -density 144x144 pgv.ps pgv.jpg;
> /usr/bin/convert -resize 50% -crop +0+182 +antialias pgv.jpg pgv.jpg;
>
> genex: Running: PATH=$PATH:/usr/bin/; export PATH; /usr/bin/convert
> -colorspace RGB -quality 85 -density 144x144 intensity.ps intensity.jpg;
> /usr/bin/convert -resize 50% -crop +0+74 +antialias intensity.jpg
> intensity.jpg;/usr/bin/convert intensity.jpg -thumbnail 100x100
> ii_thumbnail.jpg
>
> genex: Running: PATH=$PATH:/usr/bin/; export PATH; /usr/bin/convert -crop
> 468x386+72+334 -transparent black ii_overlay.ps ii_overlay.png
>
> genex: Running: PATH=$PATH:/usr/bin/; export PATH; /usr/bin/convert
> -colorspace RGB -quality 85 -density 144x144 pga.ps pga.jpg;
> /usr/bin/convert -resize 50% -crop +0+182 +antialias pga.jpg pga.jpg;
>
> genex: Running: PATH=$PATH:/usr/bin/; export PATH; /usr/bin/convert
> -colorspace RGB -quality 85 -density 144x144 tvmap_bare.pstvmap_bare.jpg; /usr/bin/convert -resize 50% -crop 864x861+0+-69 +antialias
> tvmap_bare.jpg tvmap_bare.jpg;
>
> Done.
> Preparing info for clickmaps
> Done.
> Collecting files for the web site
> Done.
> Creating metadata.
> Running: /usr/bin/mp -h metadata.html -x metadata.xml -t metadata.txt
> metadata.txt
> Usage:
> mp [-a4] [-addhdr type] [-alias name] [-allhdrs] [-article] [-bottom #]
> [-bsdprint] [-chars #] [-columns #] [-config name] [-content] [-copies
> #]
> [-digest] [-elm] [-flip] [-folder] [-forcepage] [-from] [-help]
> [-landscape] [-left #] [-linelength #] [-modtime] [-name appname]
> [-newpage] [-nobanners] [-noburstpage] [-number] [-onesided]
> [-organiser
> {filofax|franklin|proplan|timeman|tsintl|tspartner} ] [-pagelength #]
> [-portrait] [-postscript] [-printer] [-prologue name] [-remhdr type]
> [-right #] [-subject text] [-tab #] [-text] [-tumble] [-twosided] [-us]
> [-version] [-words #] [-wrap] [filename ...]
>
> Done.
> Creating KML/KMZ.
> Done.
> Finishing up shape files...
> Done.
> Cooking web pages
> Build homepage
> Build 'Most Recent Earthquake' table
> Build 'Other Recent Earthquakes' list
> events [] in list
> Done.
>
>
> *osop at sandbox1:/opt/shakemap/bin$ ./transfer -event 9583161 -www -push
> -verbose*
> transfer: ----- Starting Transfer at 07/13/2012 10:31:21 -----
> transfer: ----- Transfer finished at 07/13/2012 10:31:21 -----
>
>
> *osop at sandbox1:/opt/shakemap/bin$ ./setversion -event 9583161 -verbose*
> setversion: Nothing to do, exiting.
>
>
>
> *WITH -qtm flag for grind...*
>
> *osop at sandbox1:/opt/shakemap/bin$ ./grind -event 9583161 -xml -qtm
> -verbose*
> Map bound: -120.150000/-117.650000/33.533000/35.593000
> cp: cannot stat `/opt/shakemap/dem//tmp.topo2grd.29713.grd': No such file
> or directory
> grdsample: Could not find file
> [/opt/shakemap/dem//tmp.topo2grd.29713.grd.1]
> Could not find /opt/shakemap/dem//tmp.topo2grd.29713.grd, aborting.
> grind: Error: Error in topo/sitecorr map creation, exiting.
>
>
>
> *Branden Christensen*
> branden.christensen at osop.com.pa
> www.osop.com.pa
>
> <intensity.jpg>
>
>
>
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